miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 5' -60.7 NC_001650.1 + 130982 0.66 0.695002
Target:  5'- cGUCUucgaggcggcGCCCCugUcGCg-GGCCCUCUa -3'
miRNA:   3'- -CAGA----------CGGGGugGuCGaaCCGGGAGAg -5'
3684 5' -60.7 NC_001650.1 + 6651 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 172616 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 173235 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 173358 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 108907 0.67 0.655413
Target:  5'- -cCUGCgUCCACUAcGCggagcUGGCCUUCUCc -3'
miRNA:   3'- caGACG-GGGUGGU-CGa----ACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 122743 0.67 0.665356
Target:  5'- uUCUcCCUgACCGGCacuucggGGCCCUCUUc -3'
miRNA:   3'- cAGAcGGGgUGGUCGaa-----CCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 68964 0.67 0.675275
Target:  5'- -cCUGCCCgGCCuGGCUccggGGuCCUUCUUg -3'
miRNA:   3'- caGACGGGgUGG-UCGAa---CC-GGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 56330 0.66 0.68516
Target:  5'- cUUUGCCCCuugcuCCAGUUUGcagguuCCCUCUUu -3'
miRNA:   3'- cAGACGGGGu----GGUCGAACc-----GGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 6528 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 5909 0.68 0.615536
Target:  5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3'
miRNA:   3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5'
3684 5' -60.7 NC_001650.1 + 134320 0.68 0.575846
Target:  5'- cGUCUuCCCCcCCGGCgccccccgcgGGCCCUC-Cg -3'
miRNA:   3'- -CAGAcGGGGuGGUCGaa--------CCGGGAGaG- -5'
3684 5' -60.7 NC_001650.1 + 138755 0.74 0.287089
Target:  5'- uGUCUGCCagcauggccccuguCUGCCAGCaUGGCCCcugUCUCa -3'
miRNA:   3'- -CAGACGG--------------GGUGGUCGaACCGGG---AGAG- -5'
3684 5' -60.7 NC_001650.1 + 138680 0.72 0.35074
Target:  5'- uGUCUGCCagcauggccccuguCUGCCAGCaUGGCCCcugUCUCc -3'
miRNA:   3'- -CAGACGG--------------GGUGGUCGaACCGGG---AGAG- -5'
3684 5' -60.7 NC_001650.1 + 143670 0.71 0.392662
Target:  5'- ---cGUCCC-CCGGCUcGGUCCUCUCc -3'
miRNA:   3'- cagaCGGGGuGGUCGAaCCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 52678 0.71 0.409306
Target:  5'- ---cGCCCCAgCAGggaCUUGGgCCUCUCg -3'
miRNA:   3'- cagaCGGGGUgGUC---GAACCgGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 27584 0.71 0.442992
Target:  5'- -cCUGCCCUccuucccgggcguGCCcGCcucGGCCCUCUCg -3'
miRNA:   3'- caGACGGGG-------------UGGuCGaa-CCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 27075 0.7 0.452773
Target:  5'- uUCgagGCCCacuaCACCAGCcUGGCCCaggcgCUCa -3'
miRNA:   3'- cAGa--CGGG----GUGGUCGaACCGGGa----GAG- -5'
3684 5' -60.7 NC_001650.1 + 140743 0.69 0.545482
Target:  5'- cUCaGCCgCGCUcugauuggucgagAGCUagcUGGCCCUCUCg -3'
miRNA:   3'- cAGaCGGgGUGG-------------UCGA---ACCGGGAGAG- -5'
3684 5' -60.7 NC_001650.1 + 142258 0.68 0.566003
Target:  5'- cUCgGaCCCCGCguGCgaggUGGCCUUCUUc -3'
miRNA:   3'- cAGaC-GGGGUGguCGa---ACCGGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.