Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3686 | 5' | -62.6 | NC_001650.1 | + | 108772 | 0.98 | 0.005276 |
Target: 5'- gCGACAGCCCC-CUCGCGGCGCUCGCUu -3' miRNA: 3'- -GCUGUCGGGGaGAGCGCCGCGAGCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 54898 | 0.75 | 0.208287 |
Target: 5'- gGAUucugAGCCCCcggCUCGCGGC-CUCGCUc -3' miRNA: 3'- gCUG----UCGGGGa--GAGCGCCGcGAGCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 101606 | 0.73 | 0.280192 |
Target: 5'- gGGCAGCCCCUCUuccccaucccCGaGGCGCUC-CUg -3' miRNA: 3'- gCUGUCGGGGAGA----------GCgCCGCGAGcGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 66722 | 0.7 | 0.410131 |
Target: 5'- gGACGGUgUUguagCUCGCGGCGC-CGCa -3' miRNA: 3'- gCUGUCGgGGa---GAGCGCCGCGaGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 142188 | 0.7 | 0.410131 |
Target: 5'- uGACGGCCaCC-CaCGCGGCGCU-GCUc -3' miRNA: 3'- gCUGUCGG-GGaGaGCGCCGCGAgCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 50929 | 0.7 | 0.434302 |
Target: 5'- gGGCAGCCCCcuccccuUCUCuCGGCGCggggGCUu -3' miRNA: 3'- gCUGUCGGGG-------AGAGcGCCGCGag--CGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 106263 | 0.7 | 0.452311 |
Target: 5'- gCGACGGCCCCUC----GGUGcCUCGCa -3' miRNA: 3'- -GCUGUCGGGGAGagcgCCGC-GAGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 73201 | 0.69 | 0.46103 |
Target: 5'- gGACucccuGUCCCUCUCGCGaCcCUCGCg -3' miRNA: 3'- gCUGu----CGGGGAGAGCGCcGcGAGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 117361 | 0.69 | 0.469835 |
Target: 5'- --cCGGCgCCUCcCGCGGCGCcCGCc -3' miRNA: 3'- gcuGUCGgGGAGaGCGCCGCGaGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 67531 | 0.69 | 0.4877 |
Target: 5'- gCGACGgauGCCCCgagcgggcgggCUCGCGcGCGCUCuCUa -3' miRNA: 3'- -GCUGU---CGGGGa----------GAGCGC-CGCGAGcGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 73637 | 0.69 | 0.505877 |
Target: 5'- gGGCGGCCCCUgUUCGCGuuGCUgaggcUGCUg -3' miRNA: 3'- gCUGUCGGGGA-GAGCGCcgCGA-----GCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 73126 | 0.68 | 0.533666 |
Target: 5'- gCGACcGCCgCC-CUCGCgccuGGCGC-CGCUg -3' miRNA: 3'- -GCUGuCGG-GGaGAGCG----CCGCGaGCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 107387 | 0.68 | 0.543052 |
Target: 5'- gCGGCGGCCCUcaUC-CGCu-CGCUCGCg -3' miRNA: 3'- -GCUGUCGGGG--AGaGCGccGCGAGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 147194 | 0.68 | 0.543052 |
Target: 5'- uGACGGCCUCgUCcgagacCGUGGCcaGCUCGCg -3' miRNA: 3'- gCUGUCGGGG-AGa-----GCGCCG--CGAGCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 66812 | 0.68 | 0.543052 |
Target: 5'- uCGcCAGCUCCUCgucCGCGG-GCUCGa- -3' miRNA: 3'- -GCuGUCGGGGAGa--GCGCCgCGAGCga -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 114485 | 0.68 | 0.552491 |
Target: 5'- gGACAgGUCUCUCUCGaGGUGCaCGCUu -3' miRNA: 3'- gCUGU-CGGGGAGAGCgCCGCGaGCGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 92708 | 0.68 | 0.571511 |
Target: 5'- gGACAGCgCCCUCUUGUagaGGUGCacgaagaGCUg -3' miRNA: 3'- gCUGUCG-GGGAGAGCG---CCGCGag-----CGA- -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 157555 | 0.67 | 0.581081 |
Target: 5'- aGACAGCgCCUCcUGUGGCaGCUUGg- -3' miRNA: 3'- gCUGUCGgGGAGaGCGCCG-CGAGCga -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 90165 | 0.67 | 0.590684 |
Target: 5'- aCGcuCAGCUgCgUCUCgGCGGCGCUgGCg -3' miRNA: 3'- -GCu-GUCGGgG-AGAG-CGCCGCGAgCGa -5' |
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3686 | 5' | -62.6 | NC_001650.1 | + | 51073 | 0.67 | 0.629304 |
Target: 5'- gGGCGGuacuuCCCC-CUCGCcGCGCUCGg- -3' miRNA: 3'- gCUGUC-----GGGGaGAGCGcCGCGAGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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