miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 5' -62.6 NC_001650.1 + 54898 0.75 0.208287
Target:  5'- gGAUucugAGCCCCcggCUCGCGGC-CUCGCUc -3'
miRNA:   3'- gCUG----UCGGGGa--GAGCGCCGcGAGCGA- -5'
3686 5' -62.6 NC_001650.1 + 130967 0.66 0.686191
Target:  5'- gGACucccagaGGCCCgUCUUcgagGCGGCGCcccugUCGCg -3'
miRNA:   3'- gCUG-------UCGGGgAGAG----CGCCGCG-----AGCGa -5'
3686 5' -62.6 NC_001650.1 + 138173 0.66 0.667951
Target:  5'- aGGCGGCCCUgagCUCGUGGaGCaUGUg -3'
miRNA:   3'- gCUGUCGGGGa--GAGCGCCgCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 29348 0.66 0.664098
Target:  5'- uGAC-GCCCCUCUCGgaccaccugcucaGGCGCagCGUc -3'
miRNA:   3'- gCUGuCGGGGAGAGCg------------CCGCGa-GCGa -5'
3686 5' -62.6 NC_001650.1 + 71754 0.66 0.658311
Target:  5'- gCGGCGuGCCUCUCccaCGUGGUGgaCGCg -3'
miRNA:   3'- -GCUGU-CGGGGAGa--GCGCCGCgaGCGa -5'
3686 5' -62.6 NC_001650.1 + 90165 0.67 0.590684
Target:  5'- aCGcuCAGCUgCgUCUCgGCGGCGCUgGCg -3'
miRNA:   3'- -GCu-GUCGGgG-AGAG-CGCCGCGAgCGa -5'
3686 5' -62.6 NC_001650.1 + 157555 0.67 0.581081
Target:  5'- aGACAGCgCCUCcUGUGGCaGCUUGg- -3'
miRNA:   3'- gCUGUCGgGGAGaGCGCCG-CGAGCga -5'
3686 5' -62.6 NC_001650.1 + 92708 0.68 0.571511
Target:  5'- gGACAGCgCCCUCUUGUagaGGUGCacgaagaGCUg -3'
miRNA:   3'- gCUGUCG-GGGAGAGCG---CCGCGag-----CGA- -5'
3686 5' -62.6 NC_001650.1 + 114485 0.68 0.552491
Target:  5'- gGACAgGUCUCUCUCGaGGUGCaCGCUu -3'
miRNA:   3'- gCUGU-CGGGGAGAGCgCCGCGaGCGA- -5'
3686 5' -62.6 NC_001650.1 + 66812 0.68 0.543052
Target:  5'- uCGcCAGCUCCUCgucCGCGG-GCUCGa- -3'
miRNA:   3'- -GCuGUCGGGGAGa--GCGCCgCGAGCga -5'
3686 5' -62.6 NC_001650.1 + 67531 0.69 0.4877
Target:  5'- gCGACGgauGCCCCgagcgggcgggCUCGCGcGCGCUCuCUa -3'
miRNA:   3'- -GCUGU---CGGGGa----------GAGCGC-CGCGAGcGA- -5'
3686 5' -62.6 NC_001650.1 + 142188 0.7 0.410131
Target:  5'- uGACGGCCaCC-CaCGCGGCGCU-GCUc -3'
miRNA:   3'- gCUGUCGG-GGaGaGCGCCGCGAgCGA- -5'
3686 5' -62.6 NC_001650.1 + 66722 0.7 0.410131
Target:  5'- gGACGGUgUUguagCUCGCGGCGC-CGCa -3'
miRNA:   3'- gCUGUCGgGGa---GAGCGCCGCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 101606 0.73 0.280192
Target:  5'- gGGCAGCCCCUCUuccccaucccCGaGGCGCUC-CUg -3'
miRNA:   3'- gCUGUCGGGGAGA----------GCgCCGCGAGcGA- -5'
3686 5' -62.6 NC_001650.1 + 73637 0.69 0.505877
Target:  5'- gGGCGGCCCCUgUUCGCGuuGCUgaggcUGCUg -3'
miRNA:   3'- gCUGUCGGGGA-GAGCGCcgCGA-----GCGA- -5'
3686 5' -62.6 NC_001650.1 + 117361 0.69 0.469835
Target:  5'- --cCGGCgCCUCcCGCGGCGCcCGCc -3'
miRNA:   3'- gcuGUCGgGGAGaGCGCCGCGaGCGa -5'
3686 5' -62.6 NC_001650.1 + 73201 0.69 0.46103
Target:  5'- gGACucccuGUCCCUCUCGCGaCcCUCGCg -3'
miRNA:   3'- gCUGu----CGGGGAGAGCGCcGcGAGCGa -5'
3686 5' -62.6 NC_001650.1 + 106263 0.7 0.452311
Target:  5'- gCGACGGCCCCUC----GGUGcCUCGCa -3'
miRNA:   3'- -GCUGUCGGGGAGagcgCCGC-GAGCGa -5'
3686 5' -62.6 NC_001650.1 + 50929 0.7 0.434302
Target:  5'- gGGCAGCCCCcuccccuUCUCuCGGCGCggggGCUu -3'
miRNA:   3'- gCUGUCGGGG-------AGAGcGCCGCGag--CGA- -5'
3686 5' -62.6 NC_001650.1 + 143004 0.66 0.658311
Target:  5'- -----uCCCCUCUCGCGaauGCGC-CGCUg -3'
miRNA:   3'- gcugucGGGGAGAGCGC---CGCGaGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.