miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 58249 0.66 0.939857
Target:  5'- cGCUGGCCuuuaaauAC-GUCGGCgcuuugaCUUCcGCCa -3'
miRNA:   3'- -CGACCGGu------UGaCGGUCGa------GAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 59236 0.66 0.935029
Target:  5'- cCUGGCCAACUGCgccugcaGGgaCgaCUGCg -3'
miRNA:   3'- cGACCGGUUGACGg------UCgaGaaGACGg -5'
3703 5' -55.6 NC_001650.1 + 61910 0.66 0.935029
Target:  5'- gGC-GGCCGcgGCgGCCAGCUgcUCgcgcGCCg -3'
miRNA:   3'- -CGaCCGGU--UGaCGGUCGAgaAGa---CGG- -5'
3703 5' -55.6 NC_001650.1 + 63301 0.66 0.939857
Target:  5'- cUUGGCCAGCgcGCgCAGCUCgcg-GCg -3'
miRNA:   3'- cGACCGGUUGa-CG-GUCGAGaagaCGg -5'
3703 5' -55.6 NC_001650.1 + 65525 0.66 0.935029
Target:  5'- gGC-GGCCuucuucacCUGCCAGUgCUUC-GCCu -3'
miRNA:   3'- -CGaCCGGuu------GACGGUCGaGAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 65660 0.73 0.571988
Target:  5'- -gUGGCCAccuuuaaccuGCUGCCGGuCUCUagCUGUCu -3'
miRNA:   3'- cgACCGGU----------UGACGGUC-GAGAa-GACGG- -5'
3703 5' -55.6 NC_001650.1 + 65977 0.66 0.929963
Target:  5'- gGC-GGCCaAGCUGCCcgagaaccccgAGCg---CUGCCa -3'
miRNA:   3'- -CGaCCGG-UUGACGG-----------UCGagaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 66376 0.67 0.901043
Target:  5'- cCUGGCCAACgugUGCCuGCcCgcgUGCCu -3'
miRNA:   3'- cGACCGGUUG---ACGGuCGaGaagACGG- -5'
3703 5' -55.6 NC_001650.1 + 71940 0.67 0.873713
Target:  5'- gGCUGGCCuuugucAACaGCUuccacaugauaaAGUUCaUCUGCCa -3'
miRNA:   3'- -CGACCGG------UUGaCGG------------UCGAGaAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 73406 0.68 0.850927
Target:  5'- gGCUGGgCAGC--CUGGCUCUgaggCUGCUg -3'
miRNA:   3'- -CGACCgGUUGacGGUCGAGAa---GACGG- -5'
3703 5' -55.6 NC_001650.1 + 74813 0.71 0.692358
Target:  5'- cCUGGCCAucaucagcgcccuGCUGCCcaacucccuggcaGGCUC--CUGCCg -3'
miRNA:   3'- cGACCGGU-------------UGACGG-------------UCGAGaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 85386 0.66 0.935029
Target:  5'- uGCUGaCCucCUGCCuGCaCUUUUGCUg -3'
miRNA:   3'- -CGACcGGuuGACGGuCGaGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 88852 0.67 0.885769
Target:  5'- uGCUGGCCGACUuugacgucauguggGCCAaccccgaguccGC-CUggaacugCUGCCu -3'
miRNA:   3'- -CGACCGGUUGA--------------CGGU-----------CGaGAa------GACGG- -5'
3703 5' -55.6 NC_001650.1 + 89209 0.7 0.776398
Target:  5'- gGCgGGCCAgggcgggcggcggcaACUGCUGGCcccUCUUC-GCCa -3'
miRNA:   3'- -CGaCCGGU---------------UGACGGUCG---AGAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 90151 0.67 0.88783
Target:  5'- uGCUGaGCC---UGCagaGGUUCUUCUGCa -3'
miRNA:   3'- -CGAC-CGGuugACGg--UCGAGAAGACGg -5'
3703 5' -55.6 NC_001650.1 + 92088 0.72 0.66391
Target:  5'- aGCUGGCaCAGCUugGCguGCUCg---GCCg -3'
miRNA:   3'- -CGACCG-GUUGA--CGguCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 93956 0.75 0.455287
Target:  5'- --aGGCCGAC-GCCAgGCUCUUCaccUGCCc -3'
miRNA:   3'- cgaCCGGUUGaCGGU-CGAGAAG---ACGG- -5'
3703 5' -55.6 NC_001650.1 + 96400 0.71 0.684262
Target:  5'- aUUGGaUCGGgUGCUGGCUC-UCUGCCa -3'
miRNA:   3'- cGACC-GGUUgACGGUCGAGaAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 96851 0.66 0.913325
Target:  5'- cGCUGGCCAuaaUGCUGGCcaagaggcauuUCguggUCaGCCu -3'
miRNA:   3'- -CGACCGGUug-ACGGUCG-----------AGa---AGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 97169 1.13 0.001701
Target:  5'- uGCUGGCCAACUGCCAGCUCUUCUGCCu -3'
miRNA:   3'- -CGACCGGUUGACGGUCGAGAAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.