miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 18165 0.69 0.817799
Target:  5'- uGCUGuGUCAACUgGgCAGaggCUUCUGCUg -3'
miRNA:   3'- -CGAC-CGGUUGA-CgGUCga-GAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 18823 0.7 0.734228
Target:  5'- uGCUGGCCAGCacgGCCucGGCcaUUCagGCCu -3'
miRNA:   3'- -CGACCGGUUGa--CGG--UCGagAAGa-CGG- -5'
3703 5' -55.6 NC_001650.1 + 19839 0.67 0.901043
Target:  5'- aGCUGGCCcuaaccAAUUGUCuuuuaauuucuGGCUCaacaCUGCCa -3'
miRNA:   3'- -CGACCGG------UUGACGG-----------UCGAGaa--GACGG- -5'
3703 5' -55.6 NC_001650.1 + 26114 0.67 0.89912
Target:  5'- --gGGCCAgccccaGCUGCaggggcagguguuuCAGCUCUcgCUGCUg -3'
miRNA:   3'- cgaCCGGU------UGACG--------------GUCGAGAa-GACGG- -5'
3703 5' -55.6 NC_001650.1 + 27658 0.72 0.63321
Target:  5'- cCUGGCCuucagcuCUGgCuGCUCcUCUGCCa -3'
miRNA:   3'- cGACCGGuu-----GACgGuCGAGaAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 28839 0.67 0.900405
Target:  5'- aGCUGGCCAACUacguagaGCagaaCAGC-CggCUGCa -3'
miRNA:   3'- -CGACCGGUUGA-------CG----GUCGaGaaGACGg -5'
3703 5' -55.6 NC_001650.1 + 29866 0.67 0.907302
Target:  5'- aCUGGCCAGuCUGCUGGaagacCUggagCUGCUg -3'
miRNA:   3'- cGACCGGUU-GACGGUCga---GAa---GACGG- -5'
3703 5' -55.6 NC_001650.1 + 33850 0.66 0.929443
Target:  5'- uGCUGGCCAGCUGggucCCAggaacgagauuguGCuguccaccUCUcagguggaggUCUGCCa -3'
miRNA:   3'- -CGACCGGUUGAC----GGU-------------CG--------AGA----------AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 35342 0.68 0.850136
Target:  5'- cGCUGGCCAaucgcaacacugaGCUGCagcuuucGCUUUUgUGUCu -3'
miRNA:   3'- -CGACCGGU-------------UGACGgu-----CGAGAAgACGG- -5'
3703 5' -55.6 NC_001650.1 + 36967 0.66 0.913325
Target:  5'- uGCUGGCCAcGCUGCUgaacguguGGCUg----GCCa -3'
miRNA:   3'- -CGACCGGU-UGACGG--------UCGAgaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 43195 0.69 0.80019
Target:  5'- gGC-GGUCAGagggggGCgugUAGCUCUUCUGCCu -3'
miRNA:   3'- -CGaCCGGUUga----CG---GUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 44629 0.68 0.857958
Target:  5'- uCUGGCCuAGCUuccuaaaccccugGCCuAGCUUUUUUGCUu -3'
miRNA:   3'- cGACCGG-UUGA-------------CGG-UCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 49195 0.66 0.913325
Target:  5'- cGCUGGCCGAggGCgAGCUgcgcCUggUGCUc -3'
miRNA:   3'- -CGACCGGUUgaCGgUCGA----GAagACGG- -5'
3703 5' -55.6 NC_001650.1 + 50868 0.68 0.850927
Target:  5'- uGCUGGCgCAGCgcacGCCccgcuucgAGCggggggCUUCUGCa -3'
miRNA:   3'- -CGACCG-GUUGa---CGG--------UCGa-----GAAGACGg -5'
3703 5' -55.6 NC_001650.1 + 51619 0.67 0.907302
Target:  5'- --gGGCCAGCgccuccgcggGCCAGUUCUuguUCUccucgaucGCCa -3'
miRNA:   3'- cgaCCGGUUGa---------CGGUCGAGA---AGA--------CGG- -5'
3703 5' -55.6 NC_001650.1 + 52579 0.67 0.880882
Target:  5'- cGCaGGCaggCGGCcGCCAGCUCgg--GCCg -3'
miRNA:   3'- -CGaCCG---GUUGaCGGUCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 53426 0.69 0.80019
Target:  5'- gGC-GGUCAGagggggGCgugUAGCUCUUCUGCCu -3'
miRNA:   3'- -CGaCCGGUUga----CG---GUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 56572 0.66 0.929963
Target:  5'- cGCgagGGCCAACUcagcGCCcgAGCUCcaggCgaaGCCa -3'
miRNA:   3'- -CGa--CCGGUUGA----CGG--UCGAGaa--Ga--CGG- -5'
3703 5' -55.6 NC_001650.1 + 56703 0.67 0.894552
Target:  5'- cGC-GGCCcGCUGCC-GCUCgagggcGCCa -3'
miRNA:   3'- -CGaCCGGuUGACGGuCGAGaaga--CGG- -5'
3703 5' -55.6 NC_001650.1 + 57194 0.7 0.740097
Target:  5'- uGCUGGCCuccacaaaggccuGCUGCUgcGGCUgCUguugCUGCUg -3'
miRNA:   3'- -CGACCGGu------------UGACGG--UCGA-GAa---GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.