miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 19839 0.67 0.901043
Target:  5'- aGCUGGCCcuaaccAAUUGUCuuuuaauuucuGGCUCaacaCUGCCa -3'
miRNA:   3'- -CGACCGG------UUGACGG-----------UCGAGaa--GACGG- -5'
3703 5' -55.6 NC_001650.1 + 89209 0.7 0.776398
Target:  5'- gGCgGGCCAgggcgggcggcggcaACUGCUGGCcccUCUUC-GCCa -3'
miRNA:   3'- -CGaCCGGU---------------UGACGGUCG---AGAAGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 53426 0.69 0.80019
Target:  5'- gGC-GGUCAGagggggGCgugUAGCUCUUCUGCCu -3'
miRNA:   3'- -CGaCCGGUUga----CG---GUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 137550 0.69 0.80019
Target:  5'- cGCUGGCCcucAGCUGCauaaaCAGCUCgaggaaCUGgCa -3'
miRNA:   3'- -CGACCGG---UUGACG-----GUCGAGaa----GACgG- -5'
3703 5' -55.6 NC_001650.1 + 50868 0.68 0.850927
Target:  5'- uGCUGGCgCAGCgcacGCCccgcuucgAGCggggggCUUCUGCa -3'
miRNA:   3'- -CGACCG-GUUGa---CGG--------UCGa-----GAAGACGg -5'
3703 5' -55.6 NC_001650.1 + 71940 0.67 0.873713
Target:  5'- gGCUGGCCuuugucAACaGCUuccacaugauaaAGUUCaUCUGCCa -3'
miRNA:   3'- -CGACCGG------UUGaCGG------------UCGAGaAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 88852 0.67 0.885769
Target:  5'- uGCUGGCCGACUuugacgucauguggGCCAaccccgaguccGC-CUggaacugCUGCCu -3'
miRNA:   3'- -CGACCGGUUGA--------------CGGU-----------CGaGAa------GACGG- -5'
3703 5' -55.6 NC_001650.1 + 56703 0.67 0.894552
Target:  5'- cGC-GGCCcGCUGCC-GCUCgagggcGCCa -3'
miRNA:   3'- -CGaCCGGuUGACGGuCGAGaaga--CGG- -5'
3703 5' -55.6 NC_001650.1 + 28839 0.67 0.900405
Target:  5'- aGCUGGCCAACUacguagaGCagaaCAGC-CggCUGCa -3'
miRNA:   3'- -CGACCGGUUGA-------CG----GUCGaGaaGACGg -5'
3703 5' -55.6 NC_001650.1 + 100154 0.7 0.753657
Target:  5'- aGCaGGUCAGgUGgucguccaCCAGCUUUUUUGCCa -3'
miRNA:   3'- -CGaCCGGUUgAC--------GGUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 57194 0.7 0.740097
Target:  5'- uGCUGGCCuccacaaaggccuGCUGCUgcGGCUgCUguugCUGCUg -3'
miRNA:   3'- -CGACCGGu------------UGACGG--UCGA-GAa---GACGG- -5'
3703 5' -55.6 NC_001650.1 + 18823 0.7 0.734228
Target:  5'- uGCUGGCCAGCacgGCCucGGCcaUUCagGCCu -3'
miRNA:   3'- -CGACCGGUUGa--CGG--UCGagAAGa-CGG- -5'
3703 5' -55.6 NC_001650.1 + 131627 0.73 0.561893
Target:  5'- uGCUGGCCAcccggcccgaGCUGgCGGC-CgcCUGCCu -3'
miRNA:   3'- -CGACCGGU----------UGACgGUCGaGaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 65660 0.73 0.571988
Target:  5'- -gUGGCCAccuuuaaccuGCUGCCGGuCUCUagCUGUCu -3'
miRNA:   3'- cgACCGGU----------UGACGGUC-GAGAa-GACGG- -5'
3703 5' -55.6 NC_001650.1 + 138669 0.73 0.6025
Target:  5'- aGCaUGGCCccuguCUGCCAGCauggCcccugUCUGCCa -3'
miRNA:   3'- -CG-ACCGGuu---GACGGUCGa---Ga----AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 138725 0.73 0.6025
Target:  5'- aGCaUGGCCccuguCUGCCAGCauggCcccugUCUGCCa -3'
miRNA:   3'- -CG-ACCGGuu---GACGGUCGa---Ga----AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 109458 0.72 0.653691
Target:  5'- uGC-GGCCuggagaGGCUGCUcaGGCUCUUCgugUGCCa -3'
miRNA:   3'- -CGaCCGG------UUGACGG--UCGAGAAG---ACGG- -5'
3703 5' -55.6 NC_001650.1 + 92088 0.72 0.66391
Target:  5'- aGCUGGCaCAGCUugGCguGCUCg---GCCg -3'
miRNA:   3'- -CGACCG-GUUGA--CGguCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 74813 0.71 0.692358
Target:  5'- cCUGGCCAucaucagcgcccuGCUGCCcaacucccuggcaGGCUC--CUGCCg -3'
miRNA:   3'- cGACCGGU-------------UGACGG-------------UCGAGaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 118521 0.71 0.714443
Target:  5'- aGCUGGCCAGguagcuCUGCCugAGCc---CUGCCg -3'
miRNA:   3'- -CGACCGGUU------GACGG--UCGagaaGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.