miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3710 3' -65.5 NC_001650.1 + 111229 0.66 0.560646
Target:  5'- gCguGGGGGCGCaggAGCGCgCGUacuGGGCc -3'
miRNA:   3'- -GguCCCCCGCGg--UCGCG-GCGgc-UCUG- -5'
3710 3' -65.5 NC_001650.1 + 49893 0.66 0.560646
Target:  5'- aUCAGGcGGGCGaCCuG-GCCGCCcuGGCc -3'
miRNA:   3'- -GGUCC-CCCGC-GGuCgCGGCGGcuCUG- -5'
3710 3' -65.5 NC_001650.1 + 104032 0.66 0.559714
Target:  5'- aCAGGGcagucacguugauGGCGUguGCGCUGCCcGGcCg -3'
miRNA:   3'- gGUCCC-------------CCGCGguCGCGGCGGcUCuG- -5'
3710 3' -65.5 NC_001650.1 + 60779 0.66 0.551353
Target:  5'- gCA-GGGGCGCgGGgGUC-CUGAGGCa -3'
miRNA:   3'- gGUcCCCCGCGgUCgCGGcGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 95423 0.66 0.551353
Target:  5'- aCAGGGGGCGUCGuCGCCauauaguguucGCaugacuccUGGGACa -3'
miRNA:   3'- gGUCCCCCGCGGUcGCGG-----------CG--------GCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 57518 0.66 0.551353
Target:  5'- gCGGGGcGGgauacaGCUgaGGCGCCGgCUGGGGCu -3'
miRNA:   3'- gGUCCC-CCg-----CGG--UCGCGGC-GGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 50000 0.66 0.551353
Target:  5'- uCCAGGGGGCuCuCuGC-CCGCgGGGGa -3'
miRNA:   3'- -GGUCCCCCGcG-GuCGcGGCGgCUCUg -5'
3710 3' -65.5 NC_001650.1 + 126615 0.66 0.5458
Target:  5'- gCAGGGGGgGCgaagagggcggUGGCGaggacgaugggauguCCGCCGAGgACg -3'
miRNA:   3'- gGUCCCCCgCG-----------GUCGC---------------GGCGGCUC-UG- -5'
3710 3' -65.5 NC_001650.1 + 154464 0.66 0.542108
Target:  5'- cCCAGaguacuGGGGCGCg---GCCGCCuGGGGCg -3'
miRNA:   3'- -GGUC------CCCCGCGgucgCGGCGG-CUCUG- -5'
3710 3' -65.5 NC_001650.1 + 122735 0.66 0.542108
Target:  5'- gCCAGGaaaagauGGcCGCCAGCGUCGCCu---- -3'
miRNA:   3'- -GGUCCc------CC-GCGGUCGCGGCGGcucug -5'
3710 3' -65.5 NC_001650.1 + 118562 0.66 0.542108
Target:  5'- aCCGGGGuGGCG-CAGCucaccaGCUG-CGAGGCc -3'
miRNA:   3'- -GGUCCC-CCGCgGUCG------CGGCgGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 52953 0.66 0.539344
Target:  5'- gCCGGGGGuucccagaCcucuuuaauacucgGCCGGUGCCGCguCGAGGCg -3'
miRNA:   3'- -GGUCCCCc-------G--------------CGGUCGCGGCG--GCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 66449 0.66 0.532914
Target:  5'- -gGGGaGGGCGCCgaccGGCuGUCGCCccuGACa -3'
miRNA:   3'- ggUCC-CCCGCGG----UCG-CGGCGGcu-CUG- -5'
3710 3' -65.5 NC_001650.1 + 94197 0.66 0.532914
Target:  5'- --cGGGGGCGC--GCGCUccgGCCGAccGGCg -3'
miRNA:   3'- gguCCCCCGCGguCGCGG---CGGCU--CUG- -5'
3710 3' -65.5 NC_001650.1 + 154300 0.66 0.532914
Target:  5'- gCgAGGGGaacguuccGgGCCGGUGCC-CCGAGuACa -3'
miRNA:   3'- -GgUCCCC--------CgCGGUCGCGGcGGCUC-UG- -5'
3710 3' -65.5 NC_001650.1 + 102402 0.66 0.532914
Target:  5'- gCAGGGGGgGagCGGgGCCGCCa---- -3'
miRNA:   3'- gGUCCCCCgCg-GUCgCGGCGGcucug -5'
3710 3' -65.5 NC_001650.1 + 107862 0.66 0.532914
Target:  5'- --cGGGGGCGagggGGCGCaCGCCGAc-- -3'
miRNA:   3'- gguCCCCCGCgg--UCGCG-GCGGCUcug -5'
3710 3' -65.5 NC_001650.1 + 28548 0.66 0.532914
Target:  5'- cCCAGGucaggauauccaGGGCGCUcaugauGGCGCC-CCGGGu- -3'
miRNA:   3'- -GGUCC------------CCCGCGG------UCGCGGcGGCUCug -5'
3710 3' -65.5 NC_001650.1 + 66903 0.66 0.523777
Target:  5'- gCCGGGGagcauGGgGCCGGggaGCaugggGCCGGGGCg -3'
miRNA:   3'- -GGUCCC-----CCgCGGUCg--CGg----CGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 133152 0.66 0.523777
Target:  5'- gCgAGGGGGaaguacCGCCcacGCuCCGCCgGAGACa -3'
miRNA:   3'- -GgUCCCCC------GCGGu--CGcGGCGG-CUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.