miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 79690 0.67 0.943324
Target:  5'- gCCUGGGucagGGCCuGCGUcucgggcgaGCGCG-GGCa -3'
miRNA:   3'- -GGACCUcua-CCGG-UGCA---------UGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 24999 0.67 0.943324
Target:  5'- cCCcGGAGu--GCCugGacagGCugGUGGCc -3'
miRNA:   3'- -GGaCCUCuacCGGugCa---UGugCACCG- -5'
3724 3' -54.8 NC_001650.1 + 67369 0.67 0.943324
Target:  5'- aCUUGGAG-UGGaUCACGUggaACAgGUaGGCg -3'
miRNA:   3'- -GGACCUCuACC-GGUGCA---UGUgCA-CCG- -5'
3724 3' -54.8 NC_001650.1 + 111696 0.67 0.940609
Target:  5'- -aUGGGGucGGCCccguugaccgcggggGCGUACACG-GGCc -3'
miRNA:   3'- ggACCUCuaCCGG---------------UGCAUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 73274 0.67 0.940609
Target:  5'- gCCUGGGcuacagcuccauccuGGUGcCCGC--GCACGUGGCc -3'
miRNA:   3'- -GGACCU---------------CUACcGGUGcaUGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 123959 0.67 0.938752
Target:  5'- --cGGGGGUGGa---GUACACGggGGCg -3'
miRNA:   3'- ggaCCUCUACCggugCAUGUGCa-CCG- -5'
3724 3' -54.8 NC_001650.1 + 148396 0.67 0.938752
Target:  5'- uCCaGGAGucccUGGCCGCGccccccugGCGCGggacGGCc -3'
miRNA:   3'- -GGaCCUCu---ACCGGUGCa-------UGUGCa---CCG- -5'
3724 3' -54.8 NC_001650.1 + 30667 0.67 0.938752
Target:  5'- aCCUGGGGgcGGaCGCGcGCGCcgcggGGCg -3'
miRNA:   3'- -GGACCUCuaCCgGUGCaUGUGca---CCG- -5'
3724 3' -54.8 NC_001650.1 + 169979 0.67 0.938752
Target:  5'- gCCUGGcAGGcugcucccauUGGCCG-GUAggggcCACGUGGUg -3'
miRNA:   3'- -GGACC-UCU----------ACCGGUgCAU-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 3272 0.67 0.938752
Target:  5'- gCCUGGcAGGcugcucccauUGGCCG-GUAggggcCACGUGGUg -3'
miRNA:   3'- -GGACC-UCU----------ACCGGUgCAU-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 60589 0.67 0.93395
Target:  5'- uCCcGGGGAUcucGGCuaucugCACGUACugGUcgGGCg -3'
miRNA:   3'- -GGaCCUCUA---CCG------GUGCAUGugCA--CCG- -5'
3724 3' -54.8 NC_001650.1 + 61808 0.67 0.93395
Target:  5'- gCCcGGAGgcGGaCAgGUaguuguagcGCGCGUGGCa -3'
miRNA:   3'- -GGaCCUCuaCCgGUgCA---------UGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 40473 0.67 0.93395
Target:  5'- aCCgaGGAGggGGCCuuGUAgGgGUGGa -3'
miRNA:   3'- -GGa-CCUCuaCCGGugCAUgUgCACCg -5'
3724 3' -54.8 NC_001650.1 + 103550 0.67 0.93395
Target:  5'- --------cGGCCACGUugGCGUGGa -3'
miRNA:   3'- ggaccucuaCCGGUGCAugUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 83634 0.67 0.933457
Target:  5'- aCgaGGuGGUGGCCuucuaccACGaGCugGUGGUc -3'
miRNA:   3'- -GgaCCuCUACCGG-------UGCaUGugCACCG- -5'
3724 3' -54.8 NC_001650.1 + 35282 0.68 0.928916
Target:  5'- --cGGGGcgGGCCGgGgacggGCGCG-GGCc -3'
miRNA:   3'- ggaCCUCuaCCGGUgCa----UGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 29205 0.68 0.928916
Target:  5'- cCCUGGcaGUGGCagCACGUGCcccgaaGgGUGGCc -3'
miRNA:   3'- -GGACCucUACCG--GUGCAUG------UgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 109737 0.68 0.928916
Target:  5'- aCUGG-GAgGGaCCugGU-CACGUGGg -3'
miRNA:   3'- gGACCuCUaCC-GGugCAuGUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 121066 0.68 0.928916
Target:  5'- gCCcGGGGAc-GCCGCG-GCGCGgggGGCg -3'
miRNA:   3'- -GGaCCUCUacCGGUGCaUGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 47950 0.68 0.928916
Target:  5'- gCUGGGugcGUGGCCAUc-GCGCuGUGGCu -3'
miRNA:   3'- gGACCUc--UACCGGUGcaUGUG-CACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.