Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 91259 | 0.67 | 0.696825 |
|
Target: 5'- aACCAGCUCaucucgGGCGgGGGGAcggUCu -3' miRNA: 3'- -UGGUCGAGcga---CCGCgCCCCUcaaAG- -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 84131 | 0.68 | 0.686998 |
|
Target: 5'- gGCC-GUcCGCaGGUGCGGGGAGa--- -3' miRNA: 3'- -UGGuCGaGCGaCCGCGCCCCUCaaag -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 63312 | 0.68 | 0.667221 |
|
Target: 5'- cGCgCAGCUCGCggcGGUGCuuGGGGGcGUUgUCg -3' miRNA: 3'- -UG-GUCGAGCGa--CCGCG--CCCCU-CAA-AG- -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 66789 | 0.69 | 0.577762 |
|
Target: 5'- -aCAGCaaGCUGuccCGgGGGGAGUUUCa -3' miRNA: 3'- ugGUCGagCGACc--GCgCCCCUCAAAG- -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 115942 | 0.72 | 0.436871 |
|
Target: 5'- aACCAGCa-GCUGGUGCgccgGGGGAGgagCg -3' miRNA: 3'- -UGGUCGagCGACCGCG----CCCCUCaaaG- -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 88472 | 1.08 | 0.001837 |
|
Target: 5'- cACCAGCUCGCUGGCGCGGGGAGUUUCc -3' miRNA: 3'- -UGGUCGAGCGACCGCGCCCCUCAAAG- -5' |
|||||||
| 3726 | 3' | -59.6 | NC_001650.1 | + | 38518 | 0.66 | 0.79088 |
|
Target: 5'- uGCCAGUUCuacgUGGCggGCGGGGAGc--- -3' miRNA: 3'- -UGGUCGAGcg--ACCG--CGCCCCUCaaag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home