miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 3' -58.5 NC_001650.1 + 8697 0.66 0.831505
Target:  5'- -gGGGGcgC-GCGcGGGAGGGGCaucgggCACa -3'
miRNA:   3'- agCCCCaaGaCGU-CCUUCCCCGa-----GUG- -5'
3731 3' -58.5 NC_001650.1 + 8895 0.67 0.797514
Target:  5'- aUGGGGgUCUGguGGGuguGGGGgUCc- -3'
miRNA:   3'- aGCCCCaAGACguCCUu--CCCCgAGug -5'
3731 3' -58.5 NC_001650.1 + 17052 0.68 0.732849
Target:  5'- gUUGGGcaaugggGCGGGGAGGGGCUUg- -3'
miRNA:   3'- -AGCCCcaaga--CGUCCUUCCCCGAGug -5'
3731 3' -58.5 NC_001650.1 + 18023 0.67 0.761237
Target:  5'- gUGGuGGUggcGCGGGGuggGGuGGGCUCACa -3'
miRNA:   3'- aGCC-CCAagaCGUCCU---UC-CCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 21520 0.66 0.847488
Target:  5'- cCGGGGgggcuaCUGCuGGGA-GGGC-CGCg -3'
miRNA:   3'- aGCCCCaa----GACGuCCUUcCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 27052 0.68 0.713491
Target:  5'- gCGGGGcaugacgcUggUGCAGGAGGGGGCc--- -3'
miRNA:   3'- aGCCCC--------AagACGUCCUUCCCCGagug -5'
3731 3' -58.5 NC_001650.1 + 28364 0.66 0.839587
Target:  5'- gUGGGGgUCUcGCccGGGGAGuGGCUCAa -3'
miRNA:   3'- aGCCCCaAGA-CG--UCCUUCcCCGAGUg -5'
3731 3' -58.5 NC_001650.1 + 28588 0.69 0.674047
Target:  5'- gCGGGGcUCguggugaGCGGGGucacGGGGGCgCGCg -3'
miRNA:   3'- aGCCCCaAGa------CGUCCU----UCCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 28765 0.66 0.82074
Target:  5'- uUCGGGG-UCUuugacggugccgccGCcGGAGGGGGCg--- -3'
miRNA:   3'- -AGCCCCaAGA--------------CGuCCUUCCCCGagug -5'
3731 3' -58.5 NC_001650.1 + 28806 0.7 0.584125
Target:  5'- -gGGGGgaggagagGUGGGGAGGGGcCUCACc -3'
miRNA:   3'- agCCCCaaga----CGUCCUUCCCC-GAGUG- -5'
3731 3' -58.5 NC_001650.1 + 29365 0.68 0.742407
Target:  5'- cUGGGGUUUcGCAGGAAGGccugugggccgaGGCUa-- -3'
miRNA:   3'- aGCCCCAAGaCGUCCUUCC------------CCGAgug -5'
3731 3' -58.5 NC_001650.1 + 35676 0.73 0.433075
Target:  5'- -aGGGGUUCgu--GGAccuccuggccgGGGGGCUCACg -3'
miRNA:   3'- agCCCCAAGacguCCU-----------UCCCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 36496 0.66 0.839587
Target:  5'- cCGGGGg---GCAGGGccaggcuGGGGCUgUACu -3'
miRNA:   3'- aGCCCCaagaCGUCCUu------CCCCGA-GUG- -5'
3731 3' -58.5 NC_001650.1 + 37347 0.7 0.624059
Target:  5'- aCGGGGUUCUGCGacGAGcuGGccGCUCACa -3'
miRNA:   3'- aGCCCCAAGACGUccUUC--CC--CGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 38051 0.67 0.806246
Target:  5'- aCGGGGUgc-GCAGGggGgacaggacGGGCgugggCACc -3'
miRNA:   3'- aGCCCCAagaCGUCCuuC--------CCCGa----GUG- -5'
3731 3' -58.5 NC_001650.1 + 46910 0.72 0.506209
Target:  5'- gUGGGG--CUG-GGGggGGGGUUCGCg -3'
miRNA:   3'- aGCCCCaaGACgUCCuuCCCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 47493 0.66 0.814827
Target:  5'- cCGGGGUcUCUGaCAcGGuGGGGGUUUg- -3'
miRNA:   3'- aGCCCCA-AGAC-GU-CCuUCCCCGAGug -5'
3731 3' -58.5 NC_001650.1 + 48915 0.67 0.783248
Target:  5'- cUCGGGGacgacugcacccaggUUCUGCugAGGAGGGuGGCg--- -3'
miRNA:   3'- -AGCCCC---------------AAGACG--UCCUUCC-CCGagug -5'
3731 3' -58.5 NC_001650.1 + 50896 0.67 0.759372
Target:  5'- gCGGGGggcuUCUGCaAGGugcacgugacccAGGGGgUCACc -3'
miRNA:   3'- aGCCCCa---AGACG-UCCu-----------UCCCCgAGUG- -5'
3731 3' -58.5 NC_001650.1 + 51594 0.7 0.614049
Target:  5'- aUGGGGgaggccgcCUGCAGGuuGGGGGCcagCGCc -3'
miRNA:   3'- aGCCCCaa------GACGUCCu-UCCCCGa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.