miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 3' -58.5 NC_001650.1 + 47493 0.66 0.814827
Target:  5'- cCGGGGUcUCUGaCAcGGuGGGGGUUUg- -3'
miRNA:   3'- aGCCCCA-AGAC-GU-CCuUCCCCGAGug -5'
3731 3' -58.5 NC_001650.1 + 145500 0.68 0.713491
Target:  5'- cCGGGGgcuccuggUCaGCuGGAgcuucAGGGGCUcCACg -3'
miRNA:   3'- aGCCCCa-------AGaCGuCCU-----UCCCCGA-GUG- -5'
3731 3' -58.5 NC_001650.1 + 92917 0.68 0.723208
Target:  5'- gCGGGcgauaGUgg-GCAGGAuccGGGGGCUgGCg -3'
miRNA:   3'- aGCCC-----CAagaCGUCCU---UCCCCGAgUG- -5'
3731 3' -58.5 NC_001650.1 + 86779 0.68 0.732849
Target:  5'- aUCGGGGagC-GCAGGuuGGcGGC-CACg -3'
miRNA:   3'- -AGCCCCaaGaCGUCCuuCC-CCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 50896 0.67 0.759372
Target:  5'- gCGGGGggcuUCUGCaAGGugcacgugacccAGGGGgUCACc -3'
miRNA:   3'- aGCCCCa---AGACG-UCCu-----------UCCCCgAGUG- -5'
3731 3' -58.5 NC_001650.1 + 118660 0.67 0.779629
Target:  5'- cUCGGauacGG-UCUugcGCAGGGAGGGGUagGCg -3'
miRNA:   3'- -AGCC----CCaAGA---CGUCCUUCCCCGagUG- -5'
3731 3' -58.5 NC_001650.1 + 121829 0.67 0.783248
Target:  5'- aCGGGGgcgcgggaaccgUCUcgcgcaaGCAGGugcgaaaguucugcGAGGGGCUCAa -3'
miRNA:   3'- aGCCCCa-----------AGA-------CGUCC--------------UUCCCCGAGUg -5'
3731 3' -58.5 NC_001650.1 + 79196 0.66 0.814827
Target:  5'- aUCGGGcg-CUGgAGGAcccGGGGGCUg-- -3'
miRNA:   3'- -AGCCCcaaGACgUCCU---UCCCCGAgug -5'
3731 3' -58.5 NC_001650.1 + 129198 0.66 0.814827
Target:  5'- -aGGGGUcuaaggggaggaUCaGguGGAGGGGGgUCGa -3'
miRNA:   3'- agCCCCA------------AGaCguCCUUCCCCgAGUg -5'
3731 3' -58.5 NC_001650.1 + 107855 0.69 0.693868
Target:  5'- -aGGGGg---GCGGGGgcgaGGGGGCgCACg -3'
miRNA:   3'- agCCCCaagaCGUCCU----UCCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 76700 0.69 0.683978
Target:  5'- gUCGGcGUggUGCAGGAacuugaccggcaGGGGGCUgCGCu -3'
miRNA:   3'- -AGCCcCAagACGUCCU------------UCCCCGA-GUG- -5'
3731 3' -58.5 NC_001650.1 + 122146 0.69 0.664083
Target:  5'- gCGGGGgcg-GCGGGAGGGGGag-ACg -3'
miRNA:   3'- aGCCCCaagaCGUCCUUCCCCgagUG- -5'
3731 3' -58.5 NC_001650.1 + 35676 0.73 0.433075
Target:  5'- -aGGGGUUCgu--GGAccuccuggccgGGGGGCUCACg -3'
miRNA:   3'- agCCCCAAGacguCCU-----------UCCCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 77947 0.73 0.459808
Target:  5'- gCGGGGgcggCUGCgAGGcaccGAGGGGCcgUCGCg -3'
miRNA:   3'- aGCCCCaa--GACG-UCC----UUCCCCG--AGUG- -5'
3731 3' -58.5 NC_001650.1 + 88405 0.73 0.459808
Target:  5'- -gGGGGUgguggCgGCGGGGAGGGGgaguaCUCACc -3'
miRNA:   3'- agCCCCAa----GaCGUCCUUCCCC-----GAGUG- -5'
3731 3' -58.5 NC_001650.1 + 60188 0.72 0.478109
Target:  5'- cCGGGG-UCUGCGGGcGGcGGGUcagCACg -3'
miRNA:   3'- aGCCCCaAGACGUCCuUC-CCCGa--GUG- -5'
3731 3' -58.5 NC_001650.1 + 46910 0.72 0.506209
Target:  5'- gUGGGG--CUG-GGGggGGGGUUCGCg -3'
miRNA:   3'- aGCCCCaaGACgUCCuuCCCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 126481 0.71 0.554498
Target:  5'- aCGGGGguccgUCgagGaCGGGGAGGGGuCUUAUg -3'
miRNA:   3'- aGCCCCa----AGa--C-GUCCUUCCCC-GAGUG- -5'
3731 3' -58.5 NC_001650.1 + 89467 0.7 0.584125
Target:  5'- cCGGGGUcCUGCgcugggccgccgAGGc-GGGGUUCGCg -3'
miRNA:   3'- aGCCCCAaGACG------------UCCuuCCCCGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 37347 0.7 0.624059
Target:  5'- aCGGGGUUCUGCGacGAGcuGGccGCUCACa -3'
miRNA:   3'- aGCCCCAAGACGUccUUC--CC--CGAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.