miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
374 3' -61.5 AC_000011.1 + 16046 0.66 0.290625
Target:  5'- uGGCGGCGUcGcGCAC-CCAGUacacguucccucgCCGCGg -3'
miRNA:   3'- -UCGCCGCGuC-CGUGaGGUCGa------------GGUGC- -5'
374 3' -61.5 AC_000011.1 + 8908 0.66 0.286286
Target:  5'- cGcCGGCGCgcaugaccaccuGGGCGaggUUgAGCUCCACGu -3'
miRNA:   3'- uC-GCCGCG------------UCCGUg--AGgUCGAGGUGC- -5'
374 3' -61.5 AC_000011.1 + 7085 0.66 0.272191
Target:  5'- -aCGGCcuuGUAGGCGCagCAGCccuucUCCACGg -3'
miRNA:   3'- ucGCCG---CGUCCGUGagGUCG-----AGGUGC- -5'
374 3' -61.5 AC_000011.1 + 15810 0.66 0.25866
Target:  5'- cGGCucuuGGCGCGGGCGuaCCGGCgcgcgUCCGCc -3'
miRNA:   3'- -UCG----CCGCGUCCGUgaGGUCG-----AGGUGc -5'
374 3' -61.5 AC_000011.1 + 22923 0.67 0.250162
Target:  5'- cGCGGC-CAGGggguCGCUCUcguccagggucuaaAGCUCCGCu -3'
miRNA:   3'- uCGCCGcGUCC----GUGAGG--------------UCGAGGUGc -5'
374 3' -61.5 AC_000011.1 + 21661 0.67 0.245683
Target:  5'- uGCGGCGCAGGg---UgGGUUCCACc -3'
miRNA:   3'- uCGCCGCGUCCgugaGgUCGAGGUGc -5'
374 3' -61.5 AC_000011.1 + 5459 0.67 0.245683
Target:  5'- cGGgGGCGUAGGCG-UCC-GCgCCGCa -3'
miRNA:   3'- -UCgCCGCGUCCGUgAGGuCGaGGUGc -5'
374 3' -61.5 AC_000011.1 + 3035 0.67 0.229626
Target:  5'- cGcCGGCGCAGGUcagcaucugguagccGCgcucgUCCgaGGCUCCACa -3'
miRNA:   3'- uC-GCCGCGUCCG---------------UG-----AGG--UCGAGGUGc -5'
374 3' -61.5 AC_000011.1 + 18216 0.68 0.188727
Target:  5'- cGGCGGCGCuucacacucuGCACUcCCAGaC-CCACGa -3'
miRNA:   3'- -UCGCCGCGuc--------CGUGA-GGUC-GaGGUGC- -5'
374 3' -61.5 AC_000011.1 + 16350 0.69 0.18372
Target:  5'- cGGCGaGCGCuccGGCACcgcuUCCAagcGCUCCuACGa -3'
miRNA:   3'- -UCGC-CGCGu--CCGUG----AGGU---CGAGG-UGC- -5'
374 3' -61.5 AC_000011.1 + 2027 0.69 0.18372
Target:  5'- --aGGCGCuGGCACuUCCAuguuCUCCACa -3'
miRNA:   3'- ucgCCGCGuCCGUG-AGGUc---GAGGUGc -5'
374 3' -61.5 AC_000011.1 + 12365 0.69 0.18372
Target:  5'- uAGCGG-GCcacGCGCUCCAGCagCGCGu -3'
miRNA:   3'- -UCGCCgCGuc-CGUGAGGUCGagGUGC- -5'
374 3' -61.5 AC_000011.1 + 11138 0.69 0.178829
Target:  5'- cGCGGgGCGGGaGCUgCGGCgcggCCugGa -3'
miRNA:   3'- uCGCCgCGUCCgUGAgGUCGa---GGugC- -5'
374 3' -61.5 AC_000011.1 + 25041 0.69 0.174055
Target:  5'- cAGCGGCgGgGGGCACUCgcggaagguCAGCggCACGa -3'
miRNA:   3'- -UCGCCG-CgUCCGUGAG---------GUCGagGUGC- -5'
374 3' -61.5 AC_000011.1 + 25074 0.69 0.169395
Target:  5'- cAGCGGCGaGGGCcuGCUCgAGUgCCACu -3'
miRNA:   3'- -UCGCCGCgUCCG--UGAGgUCGaGGUGc -5'
374 3' -61.5 AC_000011.1 + 8788 0.69 0.164847
Target:  5'- cGCGGC-CGGcGCGCUCCacGGUggCCGCGa -3'
miRNA:   3'- uCGCCGcGUC-CGUGAGG--UCGa-GGUGC- -5'
374 3' -61.5 AC_000011.1 + 26514 0.69 0.164847
Target:  5'- cGGCGGC-CAGGCccaUCUggggcugguAGCUCCACa -3'
miRNA:   3'- -UCGCCGcGUCCGug-AGG---------UCGAGGUGc -5'
374 3' -61.5 AC_000011.1 + 19858 0.69 0.160408
Target:  5'- uGCGGgGCuGcGCuaccGCUCCAuGCUCCugGg -3'
miRNA:   3'- uCGCCgCGuC-CG----UGAGGU-CGAGGugC- -5'
374 3' -61.5 AC_000011.1 + 8510 0.69 0.160408
Target:  5'- gGGCGGCagGGGCACgUCGGCgCCGCGc -3'
miRNA:   3'- -UCGCCGcgUCCGUGaGGUCGaGGUGC- -5'
374 3' -61.5 AC_000011.1 + 21282 0.7 0.156078
Target:  5'- -aUGGCGCAGGCcaGCUUguGCggggCCAUGa -3'
miRNA:   3'- ucGCCGCGUCCG--UGAGguCGa---GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.