Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 5459 | 0.67 | 0.245683 |
|
Target: 5'- cGGgGGCGUAGGCG-UCC-GCgCCGCa -3' miRNA: 3'- -UCgCCGCGUCCGUgAGGuCGaGGUGc -5' |
|||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 22923 | 0.67 | 0.250162 |
|
Target: 5'- cGCGGC-CAGGggguCGCUCUcguccagggucuaaAGCUCCGCu -3' miRNA: 3'- uCGCCGcGUCC----GUGAGG--------------UCGAGGUGc -5' |
|||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 15810 | 0.66 | 0.25866 |
|
Target: 5'- cGGCucuuGGCGCGGGCGuaCCGGCgcgcgUCCGCc -3' miRNA: 3'- -UCG----CCGCGUCCGUgaGGUCG-----AGGUGc -5' |
|||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 7085 | 0.66 | 0.272191 |
|
Target: 5'- -aCGGCcuuGUAGGCGCagCAGCccuucUCCACGg -3' miRNA: 3'- ucGCCG---CGUCCGUGagGUCG-----AGGUGC- -5' |
|||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 8908 | 0.66 | 0.286286 |
|
Target: 5'- cGcCGGCGCgcaugaccaccuGGGCGaggUUgAGCUCCACGu -3' miRNA: 3'- uC-GCCGCG------------UCCGUg--AGgUCGAGGUGC- -5' |
|||||||
| 374 | 3' | -61.5 | AC_000011.1 | + | 16046 | 0.66 | 0.290625 |
|
Target: 5'- uGGCGGCGUcGcGCAC-CCAGUacacguucccucgCCGCGg -3' miRNA: 3'- -UCGCCGCGuC-CGUGaGGUCGa------------GGUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home