miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 3' -56.8 NC_001650.1 + 799 0.72 0.609804
Target:  5'- aGCUGCCAUcuuGGUGGgaa-GUCCCCUGUg -3'
miRNA:   3'- -UGGCGGUA---UCAUCagugCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 7288 0.66 0.927282
Target:  5'- gGCCGCCGggauaguuacccaaUGGcucauacaUAGUCAUcaugGUCCCCCa- -3'
miRNA:   3'- -UGGCGGU--------------AUC--------AUCAGUG----CAGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 19377 0.66 0.923601
Target:  5'- cGCC-CCAUAGcUGGUCucugggACGUUUgCCGCg -3'
miRNA:   3'- -UGGcGGUAUC-AUCAG------UGCAGGgGGCG- -5'
3804 3' -56.8 NC_001650.1 + 20883 1.1 0.002729
Target:  5'- cACCGCCAUAGUAGUCACGUCCCCCGCc -3'
miRNA:   3'- -UGGCGGUAUCAUCAGUGCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 29192 0.68 0.822652
Target:  5'- gGCCGCCuaccaccccuggcAGUGGcagCACGUgCCCCGa -3'
miRNA:   3'- -UGGCGGua-----------UCAUCa--GUGCAgGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 48120 0.66 0.900433
Target:  5'- gAUgGCCAggg-GGUcCAUGaCCCCCGCg -3'
miRNA:   3'- -UGgCGGUaucaUCA-GUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 50284 0.69 0.784489
Target:  5'- gGCCGCCugccggGGUCugGggggcgCCCCCaGCu -3'
miRNA:   3'- -UGGCGGuauca-UCAGugCa-----GGGGG-CG- -5'
3804 3' -56.8 NC_001650.1 + 50587 0.66 0.928825
Target:  5'- gGCCGCCcccaccGUGGUCAgGUgCUCCCu- -3'
miRNA:   3'- -UGGCGGuau---CAUCAGUgCA-GGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 56999 0.68 0.827622
Target:  5'- --gGCCAUGucGGUCAgcaUGUCCUCCGCc -3'
miRNA:   3'- uggCGGUAUcaUCAGU---GCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 57466 0.66 0.900433
Target:  5'- uAUCuCaCGUAGUAGccCugGUCCCCgGCg -3'
miRNA:   3'- -UGGcG-GUAUCAUCa-GugCAGGGGgCG- -5'
3804 3' -56.8 NC_001650.1 + 58125 0.71 0.659741
Target:  5'- uGCUGCugguuCAUGGUAGUUGCGUCUgUCGCc -3'
miRNA:   3'- -UGGCG-----GUAUCAUCAGUGCAGGgGGCG- -5'
3804 3' -56.8 NC_001650.1 + 58178 0.69 0.775439
Target:  5'- gGCUGCCGUGGgagGGUCuuCGcCgCCCCGa -3'
miRNA:   3'- -UGGCGGUAUCa--UCAGu-GCaG-GGGGCg -5'
3804 3' -56.8 NC_001650.1 + 61138 0.66 0.918148
Target:  5'- cGCCGCCcc------CGgGUCCCCCGCc -3'
miRNA:   3'- -UGGCGGuaucaucaGUgCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 68736 0.7 0.756979
Target:  5'- gGCaCGUCAUGGUGGccCGgGUCUCCCGg -3'
miRNA:   3'- -UG-GCGGUAUCAUCa-GUgCAGGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 69415 0.66 0.906563
Target:  5'- gGCCGCCcUGGgcGUgugCAgGaUCCCCGCc -3'
miRNA:   3'- -UGGCGGuAUCauCA---GUgCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 79691 0.68 0.85153
Target:  5'- uGCCGCCAcUAGUAG-CAac-CCCCCa- -3'
miRNA:   3'- -UGGCGGU-AUCAUCaGUgcaGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 80644 0.66 0.923601
Target:  5'- gACCGCg--GGU----GCGUCCCCUGCc -3'
miRNA:   3'- -UGGCGguaUCAucagUGCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 85585 0.67 0.873733
Target:  5'- cCCGCgGUGG-AG-UACGUgCCCCCGg -3'
miRNA:   3'- uGGCGgUAUCaUCaGUGCA-GGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 88994 0.68 0.83577
Target:  5'- gGCCuGCCGcgAGgGGUCGCGcUUCCCGCc -3'
miRNA:   3'- -UGG-CGGUa-UCaUCAGUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 89820 0.76 0.409133
Target:  5'- cGCCGCCucagcgcguccaGGUAGcCcuCGUCCCCCGCg -3'
miRNA:   3'- -UGGCGGua----------UCAUCaGu-GCAGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.