miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 3' -56.8 NC_001650.1 + 57466 0.66 0.900433
Target:  5'- uAUCuCaCGUAGUAGccCugGUCCCCgGCg -3'
miRNA:   3'- -UGGcG-GUAUCAUCa-GugCAGGGGgCG- -5'
3804 3' -56.8 NC_001650.1 + 126265 0.69 0.80219
Target:  5'- cACCGaCCcUGGagauGUCACaguGUUCCCCGCg -3'
miRNA:   3'- -UGGC-GGuAUCau--CAGUG---CAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 132931 0.69 0.80219
Target:  5'- aGCCGCCcgAG-GGUC----CCCCCGCg -3'
miRNA:   3'- -UGGCGGuaUCaUCAGugcaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 88994 0.68 0.83577
Target:  5'- gGCCuGCCGcgAGgGGUCGCGcUUCCCGCc -3'
miRNA:   3'- -UGG-CGGUa-UCaUCAGUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 94854 0.67 0.866531
Target:  5'- cCCGUgGUGGUGGUCGagGaCCCCCa- -3'
miRNA:   3'- uGGCGgUAUCAUCAGUg-CaGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 85585 0.67 0.873733
Target:  5'- cCCGCgGUGG-AG-UACGUgCCCCCGg -3'
miRNA:   3'- uGGCGgUAUCaUCaGUGCA-GGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 129045 0.67 0.880728
Target:  5'- -aCGCCAUggaggcGGUGGcCGCGcgcgaCCCCGCc -3'
miRNA:   3'- ugGCGGUA------UCAUCaGUGCag---GGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 90017 0.67 0.894082
Target:  5'- cGCCGCCGgucGGccggAGcgCGCG-CCCCCGa -3'
miRNA:   3'- -UGGCGGUa--UCa---UCa-GUGCaGGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 48120 0.66 0.900433
Target:  5'- gAUgGCCAggg-GGUcCAUGaCCCCCGCg -3'
miRNA:   3'- -UGgCGGUaucaUCA-GUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 141785 0.69 0.80219
Target:  5'- -gUGCCAUGGUGGaucggCGCGagucCCCCCGg -3'
miRNA:   3'- ugGCGGUAUCAUCa----GUGCa---GGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 164807 0.69 0.784489
Target:  5'- aGCCGCCGgc--GGcCGCGagcagaCCCCCGCg -3'
miRNA:   3'- -UGGCGGUaucaUCaGUGCa-----GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 120607 0.69 0.784489
Target:  5'- cGCCGCCcgAGgg--CACccccgCCCCCGCc -3'
miRNA:   3'- -UGGCGGuaUCaucaGUGca---GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 58125 0.71 0.659741
Target:  5'- uGCUGCugguuCAUGGUAGUUGCGUCUgUCGCc -3'
miRNA:   3'- -UGGCG-----GUAUCAUCAGUGCAGGgGGCG- -5'
3804 3' -56.8 NC_001650.1 + 163297 0.71 0.679621
Target:  5'- gUgGCCAUGGUGGacacccuccUCACGgcggCCCCgGCg -3'
miRNA:   3'- uGgCGGUAUCAUC---------AGUGCa---GGGGgCG- -5'
3804 3' -56.8 NC_001650.1 + 131972 0.71 0.689509
Target:  5'- gGCCaGCUGUGG-AG-CACGcugCCCCCGCu -3'
miRNA:   3'- -UGG-CGGUAUCaUCaGUGCa--GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 155607 0.7 0.718867
Target:  5'- gGCCG-CGUAGUuggCGCGcgCCCCCGUg -3'
miRNA:   3'- -UGGCgGUAUCAucaGUGCa-GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 156768 0.7 0.747588
Target:  5'- cACCGCUAUugaucaucuuGUAGcCcUGUUCCCCGCa -3'
miRNA:   3'- -UGGCGGUAu---------CAUCaGuGCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 68736 0.7 0.756979
Target:  5'- gGCaCGUCAUGGUGGccCGgGUCUCCCGg -3'
miRNA:   3'- -UG-GCGGUAUCAUCa-GUgCAGGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 58178 0.69 0.775439
Target:  5'- gGCUGCCGUGGgagGGUCuuCGcCgCCCCGa -3'
miRNA:   3'- -UGGCGGUAUCa--UCAGu-GCaG-GGGGCg -5'
3804 3' -56.8 NC_001650.1 + 102474 0.69 0.775439
Target:  5'- gGCCGCCcaGGaGGUgGCGguaCCCaCCGCg -3'
miRNA:   3'- -UGGCGGuaUCaUCAgUGCa--GGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.