miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 5' -65.6 NC_001650.1 + 133932 0.67 0.420573
Target:  5'- gGGCGCCCCCcagaccCCGGC--AGGCGGc- -3'
miRNA:   3'- -UCGCGGGGGac----GGCCGgcUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 81543 0.67 0.419747
Target:  5'- cGCGCgagguCCUCUGCgucugcaCGGCgGAGGCGAa- -3'
miRNA:   3'- uCGCG-----GGGGACG-------GCCGgCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 131665 0.67 0.412366
Target:  5'- cGCGCCCCCUcCCuGaggGGGGCGGUGg -3'
miRNA:   3'- uCGCGGGGGAcGGcCgg-CUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 68220 0.67 0.412366
Target:  5'- gAGC-CCCUCUGgguggagaCGGCCGAGGgGAa- -3'
miRNA:   3'- -UCGcGGGGGACg-------GCCGGCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 134763 0.68 0.40426
Target:  5'- cGGCGCCCCCUGau-GCCccaGAGGCa--- -3'
miRNA:   3'- -UCGCGGGGGACggcCGG---CUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 160582 0.68 0.396255
Target:  5'- uGCGCCCCCUugagGUgGgGCC-AGGCGAg- -3'
miRNA:   3'- uCGCGGGGGA----CGgC-CGGcUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 117776 0.68 0.39546
Target:  5'- cGCgGCCCCCUucuccaaGCCGGUgGcGGCGGg- -3'
miRNA:   3'- uCG-CGGGGGA-------CGGCCGgCuCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 132565 0.68 0.380554
Target:  5'- cGCGCCCCCgguggaGCUGGCgauCGAGGaGAa- -3'
miRNA:   3'- uCGCGGGGGa-----CGGCCG---GCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 132150 0.68 0.380554
Target:  5'- uGgGCCCCaccgagGCCGG-CGGGGCGGa- -3'
miRNA:   3'- uCgCGGGGga----CGGCCgGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 82415 0.68 0.372862
Target:  5'- uAGCGCCUgCUG-CGGCUgcugaGAGGCGGg- -3'
miRNA:   3'- -UCGCGGGgGACgGCCGG-----CUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 82350 0.68 0.365275
Target:  5'- aAGcCGCCCgCCUGCacggaGGCUGgauAGGCGGUc -3'
miRNA:   3'- -UC-GCGGG-GGACGg----CCGGC---UCCGCUAu -5'
3825 5' -65.6 NC_001650.1 + 123977 0.68 0.365275
Target:  5'- gGGCGUUCCUguacuuugUGCCcGCCGAGGUGGa- -3'
miRNA:   3'- -UCGCGGGGG--------ACGGcCGGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 74848 0.69 0.350425
Target:  5'- uGGCaGgCUCCUGCCGGCCaucauGAGGCa--- -3'
miRNA:   3'- -UCG-CgGGGGACGGCCGG-----CUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 142683 0.69 0.350425
Target:  5'- -cCGCCgCCgcGCCGGCCGAuaagcGGCGAg- -3'
miRNA:   3'- ucGCGGgGGa-CGGCCGGCU-----CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 96240 0.69 0.349694
Target:  5'- gGGCGCCCCCgggucGCUGGUCauccuggGuGGCGAc- -3'
miRNA:   3'- -UCGCGGGGGa----CGGCCGG-------CuCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 21289 0.69 0.343163
Target:  5'- uGCucaucuCCCCCUGCCuGCCGAGGUaGAg- -3'
miRNA:   3'- uCGc-----GGGGGACGGcCGGCUCCG-CUau -5'
3825 5' -65.6 NC_001650.1 + 27890 0.69 0.343163
Target:  5'- aGGCaCCCCCUGCCccccGUCGAGGCc--- -3'
miRNA:   3'- -UCGcGGGGGACGGc---CGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 57351 0.69 0.328965
Target:  5'- uGGCGCCgCCUGgUGGCCGuuGUGGg- -3'
miRNA:   3'- -UCGCGGgGGACgGCCGGCucCGCUau -5'
3825 5' -65.6 NC_001650.1 + 59150 0.69 0.322031
Target:  5'- gGGCGCUcacggguaCCCgaugGCCGGgCGAGGCGc-- -3'
miRNA:   3'- -UCGCGG--------GGGa---CGGCCgGCUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 113750 0.69 0.315207
Target:  5'- gGGCGUCCaccccaaaCUGCaGGCgGAGGUGAUGg -3'
miRNA:   3'- -UCGCGGGg-------GACGgCCGgCUCCGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.