miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3828 5' -55.4 NC_001650.1 + 2051 0.7 0.779363
Target:  5'- gGUaCCCAUGAAGGGUUGUGCaauACuCCu -3'
miRNA:   3'- -CAcGGGUAUUUCCCGACACGc--UGcGG- -5'
3828 5' -55.4 NC_001650.1 + 2780 1.11 0.002758
Target:  5'- aGUGCCCAUAAAGGGCUGUGCGACGCCc -3'
miRNA:   3'- -CACGGGUAUUUCCCGACACGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 13831 0.68 0.878641
Target:  5'- uGUGCCCcuuAAGGGCcaaUGgcagagcGgGACGCCc -3'
miRNA:   3'- -CACGGGuauUUCCCG---ACa------CgCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 19323 0.68 0.863993
Target:  5'- -gGCCCGggggguGGGgUGgcgGCGGCGCg -3'
miRNA:   3'- caCGGGUauuu--CCCgACa--CGCUGCGg -5'
3828 5' -55.4 NC_001650.1 + 22578 0.8 0.266778
Target:  5'- -cGCCCGUccGGGGCg--GCGGCGCCu -3'
miRNA:   3'- caCGGGUAuuUCCCGacaCGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 23137 0.66 0.933325
Target:  5'- cUGCCCAUAGAcaGGUgGUGCGGgacgGCCu -3'
miRNA:   3'- cACGGGUAUUUc-CCGaCACGCUg---CGG- -5'
3828 5' -55.4 NC_001650.1 + 25420 0.69 0.840474
Target:  5'- cUGaCCCuccucAGGGGCagGaGCGACGCCg -3'
miRNA:   3'- cAC-GGGuau--UUCCCGa-CaCGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 26460 0.67 0.905278
Target:  5'- uUGCCCGUgGGAGGGCcG-GaCG-CGCCc -3'
miRNA:   3'- cACGGGUA-UUUCCCGaCaC-GCuGCGG- -5'
3828 5' -55.4 NC_001650.1 + 26634 0.66 0.922819
Target:  5'- uUGCCCA---GGGGCgGcGCGGUGCUg -3'
miRNA:   3'- cACGGGUauuUCCCGaCaCGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 26735 0.88 0.08285
Target:  5'- -gGCCCGgccugGAGGGGCUGUGCGcCGCCu -3'
miRNA:   3'- caCGGGUa----UUUCCCGACACGCuGCGG- -5'
3828 5' -55.4 NC_001650.1 + 26954 0.82 0.209473
Target:  5'- cGUGCgCGU--GGGGgaGUGCGACGCCu -3'
miRNA:   3'- -CACGgGUAuuUCCCgaCACGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 27366 0.68 0.880764
Target:  5'- aUGCCCccgagagGUGGuucgauuccaauggcGGGGCUGcUGCcaGACGCCc -3'
miRNA:   3'- cACGGG-------UAUU---------------UCCCGAC-ACG--CUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 27598 0.69 0.823841
Target:  5'- -gGCCCAgcuggAGAGGGCg--GUGAUgGCCu -3'
miRNA:   3'- caCGGGUa----UUUCCCGacaCGCUG-CGG- -5'
3828 5' -55.4 NC_001650.1 + 28635 0.69 0.832248
Target:  5'- -gGCCUccAGGGGGCUgGUGCaggggcugGugGCCg -3'
miRNA:   3'- caCGGGuaUUUCCCGA-CACG--------CugCGG- -5'
3828 5' -55.4 NC_001650.1 + 30411 0.67 0.898962
Target:  5'- cUGCCCGcAGAGGGCgcccUGgaGGCGCUc -3'
miRNA:   3'- cACGGGUaUUUCCCGac--ACg-CUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 31015 0.66 0.938221
Target:  5'- -gGCCUGgcuGGGGCgg-GgGGCGCCc -3'
miRNA:   3'- caCGGGUauuUCCCGacaCgCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 31296 0.68 0.871424
Target:  5'- -aGCCCGacGGGGGCgcuucaUGCGACcCCa -3'
miRNA:   3'- caCGGGUauUUCCCGac----ACGCUGcGG- -5'
3828 5' -55.4 NC_001650.1 + 37609 0.68 0.863993
Target:  5'- uGUGCgCCAU-GAGGGUggaggaggUGUGCG-CGCg -3'
miRNA:   3'- -CACG-GGUAuUUCCCG--------ACACGCuGCGg -5'
3828 5' -55.4 NC_001650.1 + 38307 0.67 0.905278
Target:  5'- cGUGgCCAaacggcggugUGGGGGGCUGgGCuGuACGCCc -3'
miRNA:   3'- -CACgGGU----------AUUUCCCGACaCG-C-UGCGG- -5'
3828 5' -55.4 NC_001650.1 + 47583 0.66 0.922819
Target:  5'- cUGCCCGcgGAgccucAGGGCgcccCGACGCCc -3'
miRNA:   3'- cACGGGUa-UU-----UCCCGacacGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.