Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3828 | 5' | -55.4 | NC_001650.1 | + | 129974 | 0.69 | 0.832248 |
Target: 5'- -cGCCCGUGgcgcgggcccuGAGGcuGCUGaggGCGGCGCg -3' miRNA: 3'- caCGGGUAU-----------UUCC--CGACa--CGCUGCGg -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 60092 | 0.7 | 0.779363 |
Target: 5'- gGUGCCCGccGAGGGuCUGgccCGAccCGCCg -3' miRNA: 3'- -CACGGGUauUUCCC-GACac-GCU--GCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 2051 | 0.7 | 0.779363 |
Target: 5'- gGUaCCCAUGAAGGGUUGUGCaauACuCCu -3' miRNA: 3'- -CAcGGGUAUUUCCCGACACGc--UGcGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 168758 | 0.7 | 0.779363 |
Target: 5'- gGUaCCCAUGAAGGGUUGUGCaauACuCCu -3' miRNA: 3'- -CAcGGGUAUUUCCCGACACGc--UGcGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 131547 | 0.69 | 0.806514 |
Target: 5'- -cGCCCG---GGGGCUGgacGCGGgGCg -3' miRNA: 3'- caCGGGUauuUCCCGACa--CGCUgCGg -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 157264 | 0.69 | 0.81526 |
Target: 5'- -cGCCCccucGGGGCUGUaGCccauGCGCCu -3' miRNA: 3'- caCGGGuauuUCCCGACA-CGc---UGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 89854 | 0.69 | 0.823841 |
Target: 5'- cGUGCCCG--GAGaGGCgGUGCGG-GUCg -3' miRNA: 3'- -CACGGGUauUUC-CCGaCACGCUgCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 132181 | 0.69 | 0.832248 |
Target: 5'- gGUGCCCGUGAccggguucgaGGuGGCcGUGgGGUGCCu -3' miRNA: 3'- -CACGGGUAUU----------UC-CCGaCACgCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 165529 | 0.69 | 0.832248 |
Target: 5'- uUGCCUcaAGAGGGCUGUugaGCGGgcaGCUg -3' miRNA: 3'- cACGGGuaUUUCCCGACA---CGCUg--CGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 109177 | 0.71 | 0.744273 |
Target: 5'- -gGCCCgaGUGGgacgagccguacgcGGGGCggcccuucugcacGUGCGACGCCa -3' miRNA: 3'- caCGGG--UAUU--------------UCCCGa------------CACGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 127019 | 0.71 | 0.721757 |
Target: 5'- -aGCCCG--GGGGGCaGUGCGAgGgCg -3' miRNA: 3'- caCGGGUauUUCCCGaCACGCUgCgG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 158126 | 0.72 | 0.63996 |
Target: 5'- -gGCCCAUGGAGGuugcuucGCUGUGCaGAugggugacCGCCu -3' miRNA: 3'- caCGGGUAUUUCC-------CGACACG-CU--------GCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 169487 | 1.11 | 0.002758 |
Target: 5'- aGUGCCCAUAAAGGGCUGUGCGACGCCc -3' miRNA: 3'- -CACGGGUAUUUCCCGACACGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 26735 | 0.88 | 0.08285 |
Target: 5'- -gGCCCGgccugGAGGGGCUGUGCGcCGCCu -3' miRNA: 3'- caCGGGUa----UUUCCCGACACGCuGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 26954 | 0.82 | 0.209473 |
Target: 5'- cGUGCgCGU--GGGGgaGUGCGACGCCu -3' miRNA: 3'- -CACGgGUAuuUCCCgaCACGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 22578 | 0.8 | 0.266778 |
Target: 5'- -cGCCCGUccGGGGCg--GCGGCGCCu -3' miRNA: 3'- caCGGGUAuuUCCCGacaCGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 121305 | 0.8 | 0.273158 |
Target: 5'- -cGCCCGagaUAGAGGGC-GUGCG-CGCCg -3' miRNA: 3'- caCGGGU---AUUUCCCGaCACGCuGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 111069 | 0.74 | 0.579849 |
Target: 5'- -gGCCCuaccccAGGGGCUccaGCGGCGCCa -3' miRNA: 3'- caCGGGuau---UUCCCGAca-CGCUGCGG- -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 51162 | 0.73 | 0.610343 |
Target: 5'- aGUGCCCGc--GGGGCaG-GCGGCGCg -3' miRNA: 3'- -CACGGGUauuUCCCGaCaCGCUGCGg -5' |
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3828 | 5' | -55.4 | NC_001650.1 | + | 78589 | 0.73 | 0.630765 |
Target: 5'- aUGUCCAccucggcaacUGGAGG-CUGUGCGgGCGCCg -3' miRNA: 3'- cACGGGU----------AUUUCCcGACACGC-UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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