miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 5' -55.8 NC_001650.1 + 14175 1.11 0.002846
Target:  5'- aCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 180882 1.11 0.002846
Target:  5'- aCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14207 1.1 0.00309
Target:  5'- gCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 180914 1.1 0.00309
Target:  5'- gCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 181010 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 180978 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 180946 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14303 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14271 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14239 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 181038 1.03 0.009765
Target:  5'- cCCCACAUGGACCCUUGCCCACuUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGuACCU- -5'
3844 5' -55.8 NC_001650.1 + 14331 1.03 0.009765
Target:  5'- cCCCACAUGGACCCUUGCCCACuUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGuACCU- -5'
3844 5' -55.8 NC_001650.1 + 14398 0.88 0.089176
Target:  5'- aCCACAUGGACCCUUGCCCACc---- -3'
miRNA:   3'- gGGUGUACCUGGGAACGGGUGuaccu -5'
3844 5' -55.8 NC_001650.1 + 181105 0.88 0.089176
Target:  5'- aCCACAUGGACCCUUGCCCACc---- -3'
miRNA:   3'- gGGUGUACCUGGGAACGGGUGuaccu -5'
3844 5' -55.8 NC_001650.1 + 81185 0.78 0.360647
Target:  5'- uUCugGUGGGCCaCguaGCCCACGUGGAu -3'
miRNA:   3'- gGGugUACCUGG-Gaa-CGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 181160 0.77 0.409905
Target:  5'- gCCACcccccuUGGACCCcUGCCCACGUGu- -3'
miRNA:   3'- gGGUGu-----ACCUGGGaACGGGUGUACcu -5'
3844 5' -55.8 NC_001650.1 + 14453 0.77 0.409905
Target:  5'- gCCACcccccuUGGACCCcUGCCCACGUGu- -3'
miRNA:   3'- gGGUGu-----ACCUGGGaACGGGUGUACcu -5'
3844 5' -55.8 NC_001650.1 + 131931 0.74 0.539272
Target:  5'- uCCUGCuGUGGGCCC-UGCUCACgGUGGAc -3'
miRNA:   3'- -GGGUG-UACCUGGGaACGGGUG-UACCU- -5'
3844 5' -55.8 NC_001650.1 + 136172 0.72 0.639414
Target:  5'- cCCCGCGgccucGACCCcgaCCCGCAUGGAc -3'
miRNA:   3'- -GGGUGUac---CUGGGaacGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 35769 0.72 0.649516
Target:  5'- aCCC-CA--GACCacaUUGCCCACGUGGGu -3'
miRNA:   3'- -GGGuGUacCUGGg--AACGGGUGUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.