miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 5' -55.8 NC_001650.1 + 2013 0.72 0.689711
Target:  5'- cUCCACcucuAUGG-CC--UGCCCACAUGGAu -3'
miRNA:   3'- -GGGUG----UACCuGGgaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 2340 0.71 0.719396
Target:  5'- gCCACAUGGggauACCC--GCCCACuAUGGu -3'
miRNA:   3'- gGGUGUACC----UGGGaaCGGGUG-UACCu -5'
3844 5' -55.8 NC_001650.1 + 2828 0.67 0.889384
Target:  5'- gCCCGCcgGG-UCCggGUCCGCGaGGAg -3'
miRNA:   3'- -GGGUGuaCCuGGGaaCGGGUGUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 3207 0.68 0.868332
Target:  5'- gUCCAUGUGGGCagggGUCCAUGUGGGc -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 3239 0.68 0.868332
Target:  5'- gUCCAUGUGGGCagggGUCCAUGUGGGc -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 3271 0.68 0.868332
Target:  5'- gUCCAUGUGGGCagggGUCCAUGUGGGc -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 3303 0.68 0.868332
Target:  5'- gUCCAUGUGGGCaaggGUCCAUGUGGGc -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 3335 0.68 0.860894
Target:  5'- gUCCAUGUGGGCaaggGUCCAUGUGGGu -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 5970 0.68 0.863894
Target:  5'- uCCCAU-UGGGCCUUUgggaaauuacccaagGCCCACAUGc- -3'
miRNA:   3'- -GGGUGuACCUGGGAA---------------CGGGUGUACcu -5'
3844 5' -55.8 NC_001650.1 + 8371 0.67 0.889384
Target:  5'- cCCCACAcucaGGACCCcUGCCCcuCAUa-- -3'
miRNA:   3'- -GGGUGUa---CCUGGGaACGGGu-GUAccu -5'
3844 5' -55.8 NC_001650.1 + 8570 0.68 0.875563
Target:  5'- cCCUGCggGGugCCgggguuagGCCC-CAUGGGa -3'
miRNA:   3'- -GGGUGuaCCugGGaa------CGGGuGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 11212 0.68 0.848576
Target:  5'- gCCCAauagGGACCCagggggagUUGCCCACuacccccucugcccaAUGGGg -3'
miRNA:   3'- -GGGUgua-CCUGGG--------AACGGGUG---------------UACCU- -5'
3844 5' -55.8 NC_001650.1 + 11763 0.66 0.946603
Target:  5'- aCCACcgGGACCCccaUgcacucagacccccgUGCCCACAa--- -3'
miRNA:   3'- gGGUGuaCCUGGG---A---------------ACGGGUGUaccu -5'
3844 5' -55.8 NC_001650.1 + 14151 0.68 0.882582
Target:  5'- cCCCACGUGG-CCCgUUGUaaCCAaugGGAg -3'
miRNA:   3'- -GGGUGUACCuGGG-AACG--GGUguaCCU- -5'
3844 5' -55.8 NC_001650.1 + 14175 1.11 0.002846
Target:  5'- aCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14207 1.1 0.00309
Target:  5'- gCCCACAUGGACCCUUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGAACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14224 0.69 0.82919
Target:  5'- aCCACGUGGcCCCUaccgGCCa--AUGGGa -3'
miRNA:   3'- gGGUGUACCuGGGAa---CGGgugUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14239 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14271 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 14303 1.03 0.009502
Target:  5'- gCCCACAUGGACCCcUGCCCACAUGGAc -3'
miRNA:   3'- -GGGUGUACCUGGGaACGGGUGUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.