miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
387 3' -59.5 AC_000011.1 + 3762 0.66 0.397922
Target:  5'- gCCg-GCGC-CCAugGCCauuCCGCGCACGGc -3'
miRNA:   3'- gGGagCGCGaGGU--UGG---GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 4047 0.66 0.388922
Target:  5'- aCCg-GUGgUCCAggGCCuaCCGCGCGCGAa -3'
miRNA:   3'- gGGagCGCgAGGU--UGG--GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 5013 0.66 0.388029
Target:  5'- gCCUCGCuccaggaGCUCCuAUCCCugGgGgGAg -3'
miRNA:   3'- gGGAGCG-------CGAGGuUGGGGugCgUgCU- -5'
387 3' -59.5 AC_000011.1 + 5291 0.78 0.054861
Target:  5'- aCCCUCgcaaGCGC-CCAGCCCgGCGCGCa- -3'
miRNA:   3'- -GGGAG----CGCGaGGUUGGGgUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 6633 0.66 0.407054
Target:  5'- gCCUcCGCGCUuacccaucCCAugCCCugGgGCa- -3'
miRNA:   3'- gGGA-GCGCGA--------GGUugGGGugCgUGcu -5'
387 3' -59.5 AC_000011.1 + 6767 0.73 0.143399
Target:  5'- gCCCg-GgGCUCCucGCCCCcuCGCACGAg -3'
miRNA:   3'- -GGGagCgCGAGGu-UGGGGu-GCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 7326 0.71 0.203607
Target:  5'- aCUUUCGCuuuGC-CCAACCCCgccuacaagaaGCGCACGGa -3'
miRNA:   3'- -GGGAGCG---CGaGGUUGGGG-----------UGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 7601 0.68 0.282435
Target:  5'- uUCCUC-CGCgCCAACCCCcaucucccgacuggGCGCuCGAg -3'
miRNA:   3'- -GGGAGcGCGaGGUUGGGG--------------UGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 7750 0.68 0.291742
Target:  5'- aUCUCGCcCUCCAGCUCaaaugggaucgCugGCACGGg -3'
miRNA:   3'- gGGAGCGcGAGGUUGGG-----------GugCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 8234 0.76 0.077404
Target:  5'- gUCCUCGCuCUCCGACCCgcuCGCGC-CGAg -3'
miRNA:   3'- -GGGAGCGcGAGGUUGGG---GUGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 8264 0.67 0.337799
Target:  5'- aCCCUgGacaGCUCCGGCC-UGCGCGCc- -3'
miRNA:   3'- -GGGAgCg--CGAGGUUGGgGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 9194 0.68 0.314132
Target:  5'- aCCUCGCGCUCgaaGGCCCC-CGgGa-- -3'
miRNA:   3'- gGGAGCGCGAGg--UUGGGGuGCgUgcu -5'
387 3' -59.5 AC_000011.1 + 9456 0.68 0.291742
Target:  5'- gUCUUCaCGCUgCGGCCCCGCGaggACGGg -3'
miRNA:   3'- -GGGAGcGCGAgGUUGGGGUGCg--UGCU- -5'
387 3' -59.5 AC_000011.1 + 9931 0.79 0.053301
Target:  5'- aCCUgGCGCucgUCCAGCCCCA-GCGCGGc -3'
miRNA:   3'- gGGAgCGCG---AGGUUGGGGUgCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 10240 0.73 0.135723
Target:  5'- aCCUCGCGC-CCGgcGCCCC-CGCcaccgaGCGAu -3'
miRNA:   3'- gGGAGCGCGaGGU--UGGGGuGCG------UGCU- -5'
387 3' -59.5 AC_000011.1 + 11042 0.69 0.263858
Target:  5'- cCCCagGCGCgCCAGCCCCuCGCcCu- -3'
miRNA:   3'- -GGGagCGCGaGGUUGGGGuGCGuGcu -5'
387 3' -59.5 AC_000011.1 + 11108 0.66 0.397922
Target:  5'- gCCCgaggagaugCGCGCggcCCggUUCCACGCGgGGc -3'
miRNA:   3'- -GGGa--------GCGCGa--GGuuGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 11198 0.67 0.354283
Target:  5'- gCCgcgcCGCaGCUCCcGCCCCGCGUG-GAa -3'
miRNA:   3'- gGGa---GCG-CGAGGuUGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 11210 0.68 0.299064
Target:  5'- gCUgaCGgGgaUCAGCCCCGCGCGCGc -3'
miRNA:   3'- -GGgaGCgCgaGGUUGGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 12201 1.1 0.000213
Target:  5'- gCCCUCGCGCUCCAACCCCACGCACGAg -3'
miRNA:   3'- -GGGAGCGCGAGGUUGGGGUGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.