miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
387 3' -59.5 AC_000011.1 + 12201 1.1 0.000213
Target:  5'- gCCCUCGCGCUCCAACCCCACGCACGAg -3'
miRNA:   3'- -GGGAGCGCGAGGUUGGGGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 13031 0.66 0.425707
Target:  5'- cCCCagcgcCGCGCU-CGACaugaCCGCGCGCa- -3'
miRNA:   3'- -GGGa----GCGCGAgGUUGg---GGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 17068 0.66 0.416317
Target:  5'- gCCgcggcCGCGCaccUCUGACCCUgccGCGCGCGc -3'
miRNA:   3'- gGGa----GCGCG---AGGUUGGGG---UGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 16495 0.66 0.416317
Target:  5'- aUCC-CGCuGgaCCAcggcaACCCCACGC-CGAg -3'
miRNA:   3'- -GGGaGCG-CgaGGU-----UGGGGUGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 20929 0.66 0.413525
Target:  5'- gCCCaCGCGCUagaCAugaauuucgaagucACCCCAUGgAUGAg -3'
miRNA:   3'- -GGGaGCGCGAg--GU--------------UGGGGUGCgUGCU- -5'
387 3' -59.5 AC_000011.1 + 20729 0.66 0.407054
Target:  5'- aCCUCGCGC-CCA---CCAUGCGCc- -3'
miRNA:   3'- gGGAGCGCGaGGUuggGGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 11108 0.66 0.397922
Target:  5'- gCCCgaggagaugCGCGCggcCCggUUCCACGCGgGGc -3'
miRNA:   3'- -GGGa--------GCGCGa--GGuuGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 20023 0.66 0.388922
Target:  5'- uCCCUCG-GCaaCGA-CCUGCGCACGGa -3'
miRNA:   3'- -GGGAGCgCGagGUUgGGGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 16024 0.66 0.380056
Target:  5'- gCCCgUGCGCaCCcGCCCCccuCGCACu- -3'
miRNA:   3'- -GGGaGCGCGaGGuUGGGGu--GCGUGcu -5'
387 3' -59.5 AC_000011.1 + 15544 0.69 0.27062
Target:  5'- gCgCUCGCcaacGCUCCAcgcaacACCCCGUGCGCGu -3'
miRNA:   3'- -GgGAGCG----CGAGGU------UGGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 11210 0.68 0.299064
Target:  5'- gCUgaCGgGgaUCAGCCCCGCGCGCGc -3'
miRNA:   3'- -GGgaGCgCgaGGUUGGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 23457 0.68 0.299064
Target:  5'- gCCC-CGcCGC-CCAGCCCCGC-CACc- -3'
miRNA:   3'- -GGGaGC-GCGaGGUUGGGGUGcGUGcu -5'
387 3' -59.5 AC_000011.1 + 21012 0.68 0.314132
Target:  5'- gUCCgaGUGCaCCAGCCCCAC-CGCGGc -3'
miRNA:   3'- -GGGagCGCGaGGUUGGGGUGcGUGCU- -5'
387 3' -59.5 AC_000011.1 + 9194 0.68 0.314132
Target:  5'- aCCUCGCGCUCgaaGGCCCC-CGgGa-- -3'
miRNA:   3'- gGGAGCGCGAGg--UUGGGGuGCgUgcu -5'
387 3' -59.5 AC_000011.1 + 16902 0.68 0.321879
Target:  5'- gCCCaacuaCGCGCugcauccuUCCAucauCCCCACGC-CGGg -3'
miRNA:   3'- -GGGa----GCGCG--------AGGUu---GGGGUGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 15825 0.66 0.425707
Target:  5'- gCgaUGCGCcgccgCCGGCUCUugGCGCGGg -3'
miRNA:   3'- gGgaGCGCGa----GGUUGGGGugCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 12442 0.79 0.048873
Target:  5'- aCCgCUCGCGCUgggCCAcgGCCUCGCGCACGu -3'
miRNA:   3'- -GG-GAGCGCGA---GGU--UGGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 9931 0.79 0.053301
Target:  5'- aCCUgGCGCucgUCCAGCCCCA-GCGCGGc -3'
miRNA:   3'- gGGAgCGCG---AGGUUGGGGUgCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 5291 0.78 0.054861
Target:  5'- aCCCUCgcaaGCGC-CCAGCCCgGCGCGCa- -3'
miRNA:   3'- -GGGAG----CGCGaGGUUGGGgUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 8234 0.76 0.077404
Target:  5'- gUCCUCGCuCUCCGACCCgcuCGCGC-CGAg -3'
miRNA:   3'- -GGGAGCGcGAGGUUGGG---GUGCGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.