Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
387 | 3' | -59.5 | AC_000011.1 | + | 6767 | 0.73 | 0.143399 |
Target: 5'- gCCCg-GgGCUCCucGCCCCcuCGCACGAg -3' miRNA: 3'- -GGGagCgCGAGGu-UGGGGu-GCGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 11198 | 0.67 | 0.354283 |
Target: 5'- gCCgcgcCGCaGCUCCcGCCCCGCGUG-GAa -3' miRNA: 3'- gGGa---GCG-CGAGGuUGGGGUGCGUgCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 5013 | 0.66 | 0.388029 |
Target: 5'- gCCUCGCuccaggaGCUCCuAUCCCugGgGgGAg -3' miRNA: 3'- gGGAGCG-------CGAGGuUGGGGugCgUgCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 15825 | 0.66 | 0.425707 |
Target: 5'- gCgaUGCGCcgccgCCGGCUCUugGCGCGGg -3' miRNA: 3'- gGgaGCGCGa----GGUUGGGGugCGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 16631 | 0.83 | 0.026509 |
Target: 5'- gCCCUCGCGCUUgAACCCC-CgGCGCGGc -3' miRNA: 3'- -GGGAGCGCGAGgUUGGGGuG-CGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 12442 | 0.79 | 0.048873 |
Target: 5'- aCCgCUCGCGCUgggCCAcgGCCUCGCGCACGu -3' miRNA: 3'- -GG-GAGCGCGA---GGU--UGGGGUGCGUGCu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 9931 | 0.79 | 0.053301 |
Target: 5'- aCCUgGCGCucgUCCAGCCCCA-GCGCGGc -3' miRNA: 3'- gGGAgCGCG---AGGUUGGGGUgCGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 5291 | 0.78 | 0.054861 |
Target: 5'- aCCCUCgcaaGCGC-CCAGCCCgGCGCGCa- -3' miRNA: 3'- -GGGAG----CGCGaGGUUGGGgUGCGUGcu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 8234 | 0.76 | 0.077404 |
Target: 5'- gUCCUCGCuCUCCGACCCgcuCGCGC-CGAg -3' miRNA: 3'- -GGGAGCGcGAGGUUGGG---GUGCGuGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 15655 | 0.67 | 0.353445 |
Target: 5'- gCCCUUgaggGCGCcCCagggagcgcggaaGugCCCGCGCACGc -3' miRNA: 3'- -GGGAG----CGCGaGG-------------UugGGGUGCGUGCu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 24681 | 0.67 | 0.337799 |
Target: 5'- --gUCGCGCcgggCCu-CCCCGCGCAgGGu -3' miRNA: 3'- gggAGCGCGa---GGuuGGGGUGCGUgCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 7750 | 0.68 | 0.291742 |
Target: 5'- aUCUCGCcCUCCAGCUCaaaugggaucgCugGCACGGg -3' miRNA: 3'- gGGAGCGcGAGGUUGGG-----------GugCGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 7326 | 0.71 | 0.203607 |
Target: 5'- aCUUUCGCuuuGC-CCAACCCCgccuacaagaaGCGCACGGa -3' miRNA: 3'- -GGGAGCG---CGaGGUUGGGG-----------UGCGUGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 8264 | 0.67 | 0.337799 |
Target: 5'- aCCCUgGacaGCUCCGGCC-UGCGCGCc- -3' miRNA: 3'- -GGGAgCg--CGAGGUUGGgGUGCGUGcu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 11042 | 0.69 | 0.263858 |
Target: 5'- cCCCagGCGCgCCAGCCCCuCGCcCu- -3' miRNA: 3'- -GGGagCGCGaGGUUGGGGuGCGuGcu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 9456 | 0.68 | 0.291742 |
Target: 5'- gUCUUCaCGCUgCGGCCCCGCGaggACGGg -3' miRNA: 3'- -GGGAGcGCGAgGUUGGGGUGCg--UGCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 15895 | 0.67 | 0.337799 |
Target: 5'- uCCCgUGCGC-CUGGCCCUGCGCAg-- -3' miRNA: 3'- -GGGaGCGCGaGGUUGGGGUGCGUgcu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 22084 | 0.67 | 0.354283 |
Target: 5'- aCCC-CGUGUaCCGcaACuCCCGCGCGCa- -3' miRNA: 3'- -GGGaGCGCGaGGU--UG-GGGUGCGUGcu -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 15791 | 0.69 | 0.277521 |
Target: 5'- aCCggCGCGCgUCC-GCCaCCACGCuguCGAu -3' miRNA: 3'- gGGa-GCGCG-AGGuUGG-GGUGCGu--GCU- -5' |
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387 | 3' | -59.5 | AC_000011.1 | + | 7601 | 0.68 | 0.282435 |
Target: 5'- uUCCUC-CGCgCCAACCCCcaucucccgacuggGCGCuCGAg -3' miRNA: 3'- -GGGAGcGCGaGGUUGGGG--------------UGCGuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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