miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
387 3' -59.5 AC_000011.1 + 22084 0.67 0.354283
Target:  5'- aCCC-CGUGUaCCGcaACuCCCGCGCGCa- -3'
miRNA:   3'- -GGGaGCGCGaGGU--UG-GGGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 5013 0.66 0.388029
Target:  5'- gCCUCGCuccaggaGCUCCuAUCCCugGgGgGAg -3'
miRNA:   3'- gGGAGCG-------CGAGGuUGGGGugCgUgCU- -5'
387 3' -59.5 AC_000011.1 + 4047 0.66 0.388922
Target:  5'- aCCg-GUGgUCCAggGCCuaCCGCGCGCGAa -3'
miRNA:   3'- gGGagCGCgAGGU--UGG--GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 3762 0.66 0.397922
Target:  5'- gCCg-GCGC-CCAugGCCauuCCGCGCACGGc -3'
miRNA:   3'- gGGagCGCGaGGU--UGG---GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 6633 0.66 0.407054
Target:  5'- gCCUcCGCGCUuacccaucCCAugCCCugGgGCa- -3'
miRNA:   3'- gGGA-GCGCGA--------GGUugGGGugCgUGcu -5'
387 3' -59.5 AC_000011.1 + 7750 0.68 0.291742
Target:  5'- aUCUCGCcCUCCAGCUCaaaugggaucgCugGCACGGg -3'
miRNA:   3'- gGGAGCGcGAGGUUGGG-----------GugCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 9456 0.68 0.291742
Target:  5'- gUCUUCaCGCUgCGGCCCCGCGaggACGGg -3'
miRNA:   3'- -GGGAGcGCGAgGUUGGGGUGCg--UGCU- -5'
387 3' -59.5 AC_000011.1 + 7601 0.68 0.282435
Target:  5'- uUCCUC-CGCgCCAACCCCcaucucccgacuggGCGCuCGAg -3'
miRNA:   3'- -GGGAGcGCGaGGUUGGGG--------------UGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 16631 0.83 0.026509
Target:  5'- gCCCUCGCGCUUgAACCCC-CgGCGCGGc -3'
miRNA:   3'- -GGGAGCGCGAGgUUGGGGuG-CGUGCU- -5'
387 3' -59.5 AC_000011.1 + 12442 0.79 0.048873
Target:  5'- aCCgCUCGCGCUgggCCAcgGCCUCGCGCACGu -3'
miRNA:   3'- -GG-GAGCGCGA---GGU--UGGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 9931 0.79 0.053301
Target:  5'- aCCUgGCGCucgUCCAGCCCCA-GCGCGGc -3'
miRNA:   3'- gGGAgCGCG---AGGUUGGGGUgCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 5291 0.78 0.054861
Target:  5'- aCCCUCgcaaGCGC-CCAGCCCgGCGCGCa- -3'
miRNA:   3'- -GGGAG----CGCGaGGUUGGGgUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 8234 0.76 0.077404
Target:  5'- gUCCUCGCuCUCCGACCCgcuCGCGC-CGAg -3'
miRNA:   3'- -GGGAGCGcGAGGUUGGG---GUGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 10240 0.73 0.135723
Target:  5'- aCCUCGCGC-CCGgcGCCCC-CGCcaccgaGCGAu -3'
miRNA:   3'- gGGAGCGCGaGGU--UGGGGuGCG------UGCU- -5'
387 3' -59.5 AC_000011.1 + 6767 0.73 0.143399
Target:  5'- gCCCg-GgGCUCCucGCCCCcuCGCACGAg -3'
miRNA:   3'- -GGGagCgCGAGGu-UGGGGu-GCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 7326 0.71 0.203607
Target:  5'- aCUUUCGCuuuGC-CCAACCCCgccuacaagaaGCGCACGGa -3'
miRNA:   3'- -GGGAGCG---CGaGGUUGGGG-----------UGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 11042 0.69 0.263858
Target:  5'- cCCCagGCGCgCCAGCCCCuCGCcCu- -3'
miRNA:   3'- -GGGagCGCGaGGUUGGGGuGCGuGcu -5'
387 3' -59.5 AC_000011.1 + 15791 0.69 0.277521
Target:  5'- aCCggCGCGCgUCC-GCCaCCACGCuguCGAu -3'
miRNA:   3'- gGGa-GCGCG-AGGuUGG-GGUGCGu--GCU- -5'
387 3' -59.5 AC_000011.1 + 15825 0.66 0.425707
Target:  5'- gCgaUGCGCcgccgCCGGCUCUugGCGCGGg -3'
miRNA:   3'- gGgaGCGCGa----GGUUGGGGugCGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.