miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
388 5' -51.8 AC_000011.1 + 12324 1.1 0.001074
Target:  5'- cCGCUACAACAGCACCAACGUGCAGACc -3'
miRNA:   3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5'
388 5' -51.8 AC_000011.1 + 11013 0.79 0.157721
Target:  5'- uCGCcGgAGCGGCACCcgcGCGUGCAGAUg -3'
miRNA:   3'- -GCGaUgUUGUCGUGGu--UGCACGUCUG- -5'
388 5' -51.8 AC_000011.1 + 16802 0.76 0.255675
Target:  5'- aGCccaGCAcCAGCACCAugGaggUGCAGACg -3'
miRNA:   3'- gCGa--UGUuGUCGUGGUugC---ACGUCUG- -5'
388 5' -51.8 AC_000011.1 + 3734 0.73 0.369719
Target:  5'- gCGCUggcggcagauGCAGCAGCugCGGCG-GCAGcuGCg -3'
miRNA:   3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5'
388 5' -51.8 AC_000011.1 + 13413 0.73 0.379082
Target:  5'- cCGCcGCGGCAGCACCcucGCG-GcCGGACa -3'
miRNA:   3'- -GCGaUGUUGUCGUGGu--UGCaC-GUCUG- -5'
388 5' -51.8 AC_000011.1 + 12763 0.72 0.438488
Target:  5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3'
miRNA:   3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5'
388 5' -51.8 AC_000011.1 + 25199 0.72 0.438488
Target:  5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3'
miRNA:   3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5'
388 5' -51.8 AC_000011.1 + 3473 0.71 0.47012
Target:  5'- uGUUGCAGCAGCAUgAGCGgaaGCGG-Cu -3'
miRNA:   3'- gCGAUGUUGUCGUGgUUGCa--CGUCuG- -5'
388 5' -51.8 AC_000011.1 + 17633 0.7 0.514013
Target:  5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3'
miRNA:   3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5'
388 5' -51.8 AC_000011.1 + 16989 0.7 0.525252
Target:  5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3'
miRNA:   3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5'
388 5' -51.8 AC_000011.1 + 19254 0.7 0.536583
Target:  5'- -aCUACAACAGCACUGGCaauauggggGUGCuGGCc -3'
miRNA:   3'- gcGAUGUUGUCGUGGUUG---------CACGuCUG- -5'
388 5' -51.8 AC_000011.1 + 15887 0.7 0.536583
Target:  5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3'
miRNA:   3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5'
388 5' -51.8 AC_000011.1 + 8577 0.7 0.547997
Target:  5'- cCGCgc--GCGGCGCCGACGUGCc--- -3'
miRNA:   3'- -GCGauguUGUCGUGGUUGCACGucug -5'
388 5' -51.8 AC_000011.1 + 11534 0.69 0.571043
Target:  5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3'
miRNA:   3'- gcGAUGUUgUCGUGGUugCACGUCUg -5'
388 5' -51.8 AC_000011.1 + 14843 0.68 0.641208
Target:  5'- gCGCcGCAGCAGUGgCAGCG-GCcgAGGCg -3'
miRNA:   3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5'
388 5' -51.8 AC_000011.1 + 18125 0.68 0.641208
Target:  5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3'
miRNA:   3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 8968 0.68 0.651765
Target:  5'- aGUUGCAGaGGCGCUguagagguaguugAGCGUGguGGCg -3'
miRNA:   3'- gCGAUGUUgUCGUGG-------------UUGCACguCUG- -5'
388 5' -51.8 AC_000011.1 + 30877 0.68 0.664645
Target:  5'- uGCUACAGCAGCagauGCagGugGUGaAGGCa -3'
miRNA:   3'- gCGAUGUUGUCG----UGg-UugCACgUCUG- -5'
388 5' -51.8 AC_000011.1 + 33875 0.68 0.664645
Target:  5'- aCGgaGCGGCGGCGgCAGCGacugcUGCGGGg -3'
miRNA:   3'- -GCgaUGUUGUCGUgGUUGC-----ACGUCUg -5'
388 5' -51.8 AC_000011.1 + 22453 0.67 0.676317
Target:  5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3'
miRNA:   3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.