Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
388 | 5' | -51.8 | AC_000011.1 | + | 3473 | 0.71 | 0.47012 |
Target: 5'- uGUUGCAGCAGCAUgAGCGgaaGCGG-Cu -3' miRNA: 3'- gCGAUGUUGUCGUGgUUGCa--CGUCuG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 3734 | 0.73 | 0.369719 |
Target: 5'- gCGCUggcggcagauGCAGCAGCugCGGCG-GCAGcuGCg -3' miRNA: 3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8235 | 0.66 | 0.760317 |
Target: 5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3' miRNA: 3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8577 | 0.7 | 0.547997 |
Target: 5'- cCGCgc--GCGGCGCCGACGUGCc--- -3' miRNA: 3'- -GCGauguUGUCGUGGUUGCACGucug -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 8968 | 0.68 | 0.651765 |
Target: 5'- aGUUGCAGaGGCGCUguagagguaguugAGCGUGguGGCg -3' miRNA: 3'- gCGAUGUUgUCGUGG-------------UUGCACguCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11013 | 0.79 | 0.157721 |
Target: 5'- uCGCcGgAGCGGCACCcgcGCGUGCAGAUg -3' miRNA: 3'- -GCGaUgUUGUCGUGGu--UGCACGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11137 | 0.66 | 0.777598 |
Target: 5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACc -3' miRNA: 3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11534 | 0.69 | 0.571043 |
Target: 5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3' miRNA: 3'- gcGAUGUUgUCGUGGUugCACGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 11744 | 0.66 | 0.788179 |
Target: 5'- cCGCaACGACAggauGCACCGugcggugaGCGccaGCAGGCg -3' miRNA: 3'- -GCGaUGUUGU----CGUGGU--------UGCa--CGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 12324 | 1.1 | 0.001074 |
Target: 5'- cCGCUACAACAGCACCAACGUGCAGACc -3' miRNA: 3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 12624 | 0.66 | 0.765761 |
Target: 5'- gGCUuucaagaACuuGCAGgGCCuguggGGCGUGCAGGCc -3' miRNA: 3'- gCGA-------UGu-UGUCgUGG-----UUGCACGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 12763 | 0.72 | 0.438488 |
Target: 5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3' miRNA: 3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 13413 | 0.73 | 0.379082 |
Target: 5'- cCGCcGCGGCAGCACCcucGCG-GcCGGACa -3' miRNA: 3'- -GCGaUGUUGUCGUGGu--UGCaC-GUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 14095 | 0.66 | 0.785023 |
Target: 5'- uCGCUgaacuaccagaacgACcACAGCaacuuccugaccACCGugGUGCAGAa -3' miRNA: 3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 14843 | 0.68 | 0.641208 |
Target: 5'- gCGCcGCAGCAGUGgCAGCG-GCcgAGGCg -3' miRNA: 3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 15887 | 0.7 | 0.536583 |
Target: 5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3' miRNA: 3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 16673 | 0.66 | 0.766846 |
Target: 5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3' miRNA: 3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 16802 | 0.76 | 0.255675 |
Target: 5'- aGCccaGCAcCAGCACCAugGaggUGCAGACg -3' miRNA: 3'- gCGa--UGUuGUCGUGGUugC---ACGUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 16989 | 0.7 | 0.525252 |
Target: 5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3' miRNA: 3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5' |
|||||||
388 | 5' | -51.8 | AC_000011.1 | + | 17633 | 0.7 | 0.514013 |
Target: 5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3' miRNA: 3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home