Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
392 | 3' | -61.1 | AC_000011.1 | + | 13026 | 1.09 | 0.000154 |
Target: 5'- gCCACCCCCAGCGCCGCGCUCGACAUGa -3' miRNA: 3'- -GGUGGGGGUCGCGGCGCGAGCUGUAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 16618 | 0.78 | 0.041005 |
Target: 5'- -aACCCCCggcgcGGCGCCGCGgUCGGCAg- -3' miRNA: 3'- ggUGGGGG-----UCGCGGCGCgAGCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 15685 | 0.73 | 0.099266 |
Target: 5'- aCACCCCCGcCGCCGCGCcCGucuccacCGUGg -3' miRNA: 3'- gGUGGGGGUcGCGGCGCGaGCu------GUAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 3686 | 0.73 | 0.099266 |
Target: 5'- uCUGCCgCCAGCGCCGUGCgCGGaAUGg -3' miRNA: 3'- -GGUGGgGGUCGCGGCGCGaGCUgUAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 30912 | 0.71 | 0.142255 |
Target: 5'- aCCACCCCCAGUaCCGCGaccagCGAgGg- -3' miRNA: 3'- -GGUGGGGGUCGcGGCGCga---GCUgUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 9919 | 0.71 | 0.150222 |
Target: 5'- uCCAgCCCCAGCGCgGCuucggGCUCacgcGCAUGc -3' miRNA: 3'- -GGUgGGGGUCGCGgCG-----CGAGc---UGUAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 21446 | 0.71 | 0.158593 |
Target: 5'- uCCACCCagaccgugCAGgGuCCGCGCUCGGCc-- -3' miRNA: 3'- -GGUGGGg-------GUCgC-GGCGCGAGCUGuac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 5285 | 0.7 | 0.167382 |
Target: 5'- aCCGCUCCCgaucGGCGCCcuGCGCgUCGGCc-- -3' miRNA: 3'- -GGUGGGGG----UCGCGG--CGCG-AGCUGuac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 15566 | 0.69 | 0.196417 |
Target: 5'- aCACCCCguGCGCgUGCGCg-GGCAc- -3' miRNA: 3'- gGUGGGGguCGCG-GCGCGagCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 16267 | 0.69 | 0.207033 |
Target: 5'- uUCGcCCCCCGGCGgCGCGUgcagUGGCGc- -3' miRNA: 3'- -GGU-GGGGGUCGCgGCGCGa---GCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 16342 | 0.68 | 0.223884 |
Target: 5'- uUCACgCCCGGCGa-GCGCUcCGGCAc- -3' miRNA: 3'- -GGUGgGGGUCGCggCGCGA-GCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 9888 | 0.68 | 0.223884 |
Target: 5'- gCGCCaggUCGGCGacgaCGCGCUCGGCGa- -3' miRNA: 3'- gGUGGg--GGUCGCg---GCGCGAGCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 16927 | 0.68 | 0.229754 |
Target: 5'- aUCAUCCCCA-CGCCGgGCUaccgCGGCAc- -3' miRNA: 3'- -GGUGGGGGUcGCGGCgCGA----GCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 16863 | 0.68 | 0.235754 |
Target: 5'- gCACCUCCauggugcuGGUGCUGgGCUUGAuCAUGg -3' miRNA: 3'- gGUGGGGG--------UCGCGGCgCGAGCU-GUAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 17776 | 0.68 | 0.248149 |
Target: 5'- gCCGCCuggaCCCGGUGCCGCccGC-CGGCuccGUGg -3' miRNA: 3'- -GGUGG----GGGUCGCGGCG--CGaGCUG---UAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 21316 | 0.68 | 0.254546 |
Target: 5'- cUCGCCCCCGGUcucgcggccgGCCGUGUU-GACgAUGg -3' miRNA: 3'- -GGUGGGGGUCG----------CGGCGCGAgCUG-UAC- -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 9365 | 0.67 | 0.261078 |
Target: 5'- gUCugCCCguGCGCCGCcggCGACGc- -3' miRNA: 3'- -GGugGGGguCGCGGCGcgaGCUGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 14253 | 0.67 | 0.27455 |
Target: 5'- gCCGCCCCaccGCGa-GCGCUCGuCAa- -3' miRNA: 3'- -GGUGGGGgu-CGCggCGCGAGCuGUac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 26496 | 0.67 | 0.281492 |
Target: 5'- uCCACCCgcaugaauuggcUCAGCGCCGgGCccgCGAUg-- -3' miRNA: 3'- -GGUGGG------------GGUCGCGGCgCGa--GCUGuac -5' |
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392 | 3' | -61.1 | AC_000011.1 | + | 8583 | 0.67 | 0.281492 |
Target: 5'- -aACCUaCCGcGCGCgGCGC-CGACGUGc -3' miRNA: 3'- ggUGGG-GGU-CGCGgCGCGaGCUGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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