Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
394 | 5' | -48.6 | AC_000011.1 | + | 34021 | 0.66 | 0.907426 |
Target: 5'- uGGUGGUucuGUgUUGCAcGUaCUGCAGCg -3' miRNA: 3'- -CCGCUAu--UAaAACGUuCGcGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 75 | 0.66 | 0.907426 |
Target: 5'- gGGCGGUGAUUggucgaggGaUGAGCGaCCGUuaggGGCg -3' miRNA: 3'- -CCGCUAUUAAaa------C-GUUCGC-GGCG----UCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 5296 | 0.66 | 0.910263 |
Target: 5'- aGCGcacccuc-GCAAGCGCC-CAGCc -3' miRNA: 3'- cCGCuauuaaaaCGUUCGCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 8949 | 0.66 | 0.914422 |
Target: 5'- uGGCGcgugaagaccgcGUAGU--UGCAgaGGCGCUGUAGa -3' miRNA: 3'- -CCGC------------UAUUAaaACGU--UCGCGGCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17360 | 0.66 | 0.914422 |
Target: 5'- cGGCGAUGAUgggGaucAGCGCgGgCAGg -3' miRNA: 3'- -CCGCUAUUAaaaCgu-UCGCGgC-GUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 16437 | 0.66 | 0.914422 |
Target: 5'- gGGCGA--GUUUgcuuacgGCAAGCgcaGCCGUuccGCa -3' miRNA: 3'- -CCGCUauUAAAa------CGUUCG---CGGCGu--CG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 10586 | 0.66 | 0.921094 |
Target: 5'- aGGCcgGAUGAgacuaGUAAGCGCggaaaGCGGCc -3' miRNA: 3'- -CCG--CUAUUaaaa-CGUUCGCGg----CGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 25084 | 0.66 | 0.921094 |
Target: 5'- aGGCcaGGUAGUUggcCAGGCGCaGCAGg -3' miRNA: 3'- -CCG--CUAUUAAaacGUUCGCGgCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21745 | 0.66 | 0.921094 |
Target: 5'- aGGCGGUGGccuucuCGAuGCGCgCGCGGUg -3' miRNA: 3'- -CCGCUAUUaaaac-GUU-CGCG-GCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 33986 | 0.66 | 0.921094 |
Target: 5'- aGCGAgaucc--GCAuGCGCUGCuGCg -3' miRNA: 3'- cCGCUauuaaaaCGUuCGCGGCGuCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 28473 | 0.66 | 0.927441 |
Target: 5'- aGCGGUGAUU-----AGCGCCGU-GCa -3' miRNA: 3'- cCGCUAUUAAaacguUCGCGGCGuCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21572 | 0.66 | 0.932283 |
Target: 5'- gGGCGGUcgggccagUGCAcgaAGCGUgcaggaacaUGCAGCa -3' miRNA: 3'- -CCGCUAuuaaa---ACGU---UCGCG---------GCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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