Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
394 | 5' | -48.6 | AC_000011.1 | + | 10885 | 0.69 | 0.768194 |
Target: 5'- gGGUGGUGGgggcGCAucUGCCGCAGUa -3' miRNA: 3'- -CCGCUAUUaaaaCGUucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 27221 | 0.69 | 0.798317 |
Target: 5'- cGGCGAgaucc---CGAGCGaaGCAGCg -3' miRNA: 3'- -CCGCUauuaaaacGUUCGCggCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15995 | 0.69 | 0.800411 |
Target: 5'- uGGCGAUGGccgcUGCcgcCGCCGUGGCc -3' miRNA: 3'- -CCGCUAUUaaa-ACGuucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 12039 | 0.69 | 0.810754 |
Target: 5'- cGCGAUGcgg--GC-GGCGCUGCAGa -3' miRNA: 3'- cCGCUAUuaaaaCGuUCGCGGCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15339 | 0.68 | 0.820876 |
Target: 5'- cGGUGGUAAUg--GUggGCGCgGgCGGg -3' miRNA: 3'- -CCGCUAUUAaaaCGuuCGCGgC-GUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 31526 | 0.68 | 0.840405 |
Target: 5'- uGGCGAaugcgaAGUUggGCGAGuCGCUGCuccgaGGCg -3' miRNA: 3'- -CCGCUa-----UUAAaaCGUUC-GCGGCG-----UCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17050 | 0.68 | 0.840405 |
Target: 5'- uGGUGcgGAgagUGUAc-CGCCGCGGCc -3' miRNA: 3'- -CCGCuaUUaaaACGUucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15758 | 0.68 | 0.858902 |
Target: 5'- cGGCGuccacGGUggaGaCGGGCGCgGCGGCg -3' miRNA: 3'- -CCGCua---UUAaaaC-GUUCGCGgCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 3730 | 0.67 | 0.876284 |
Target: 5'- uGGCGGcaga--UGC-AGCaGCUGCGGCg -3' miRNA: 3'- -CCGCUauuaaaACGuUCG-CGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 25176 | 0.67 | 0.877122 |
Target: 5'- cGGCaccuucgagUUGCAAGgGCC-CAGCg -3' miRNA: 3'- -CCGcuauuaa--AACGUUCgCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 16398 | 0.67 | 0.881269 |
Target: 5'- cGGgGAUGAUgauauucuggaGCAGGCGgCCG-AGCg -3' miRNA: 3'- -CCgCUAUUAaaa--------CGUUCGC-GGCgUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 9286 | 0.67 | 0.884533 |
Target: 5'- uGGCGGggGAggggGCcuGCGUCGcCGGCg -3' miRNA: 3'- -CCGCUa-UUaaaaCGuuCGCGGC-GUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 34724 | 0.67 | 0.884533 |
Target: 5'- cGGCGAUcggugUGC-AGCGCC-CGGa -3' miRNA: 3'- -CCGCUAuuaaaACGuUCGCGGcGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 2273 | 0.67 | 0.892477 |
Target: 5'- gGGUcuGAUGAguc-GCAAGCGCC-CAGa -3' miRNA: 3'- -CCG--CUAUUaaaaCGUUCGCGGcGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21953 | 0.67 | 0.892477 |
Target: 5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3' miRNA: 3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 13342 | 0.67 | 0.892477 |
Target: 5'- cGGCGcUGuccggccGCGAGggugcUGCCGCGGCg -3' miRNA: 3'- -CCGCuAUuaaaa--CGUUC-----GCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 10262 | 0.67 | 0.90011 |
Target: 5'- cGGCGGUGG---UGgAGGCG-CGCGGg -3' miRNA: 3'- -CCGCUAUUaaaACgUUCGCgGCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15588 | 0.66 | 0.903808 |
Target: 5'- uGGCGAgcgccuccguacaucUUGCuGGCGCgCGCAGg -3' miRNA: 3'- -CCGCUauuaa----------AACGuUCGCG-GCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 18381 | 0.66 | 0.906709 |
Target: 5'- cGGCGAUG----UGCAuguaCGCCcacugggGCAGCa -3' miRNA: 3'- -CCGCUAUuaaaACGUuc--GCGG-------CGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 75 | 0.66 | 0.907426 |
Target: 5'- gGGCGGUGAUUggucgaggGaUGAGCGaCCGUuaggGGCg -3' miRNA: 3'- -CCGCUAUUAAaa------C-GUUCGC-GGCG----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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