miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 5' -48.6 AC_000011.1 + 10262 0.67 0.90011
Target:  5'- cGGCGGUGG---UGgAGGCG-CGCGGg -3'
miRNA:   3'- -CCGCUAUUaaaACgUUCGCgGCGUCg -5'
394 5' -48.6 AC_000011.1 + 13342 0.67 0.892477
Target:  5'- cGGCGcUGuccggccGCGAGggugcUGCCGCGGCg -3'
miRNA:   3'- -CCGCuAUuaaaa--CGUUC-----GCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21953 0.67 0.892477
Target:  5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3'
miRNA:   3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 2273 0.67 0.892477
Target:  5'- gGGUcuGAUGAguc-GCAAGCGCC-CAGa -3'
miRNA:   3'- -CCG--CUAUUaaaaCGUUCGCGGcGUCg -5'
394 5' -48.6 AC_000011.1 + 15339 0.68 0.820876
Target:  5'- cGGUGGUAAUg--GUggGCGCgGgCGGg -3'
miRNA:   3'- -CCGCUAUUAaaaCGuuCGCGgC-GUCg -5'
394 5' -48.6 AC_000011.1 + 15758 0.68 0.858902
Target:  5'- cGGCGuccacGGUggaGaCGGGCGCgGCGGCg -3'
miRNA:   3'- -CCGCua---UUAaaaC-GUUCGCGgCGUCG- -5'
394 5' -48.6 AC_000011.1 + 31526 0.68 0.840405
Target:  5'- uGGCGAaugcgaAGUUggGCGAGuCGCUGCuccgaGGCg -3'
miRNA:   3'- -CCGCUa-----UUAAaaCGUUC-GCGGCG-----UCG- -5'
394 5' -48.6 AC_000011.1 + 17050 0.68 0.840405
Target:  5'- uGGUGcgGAgagUGUAc-CGCCGCGGCc -3'
miRNA:   3'- -CCGCuaUUaaaACGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 9384 0.69 0.767092
Target:  5'- cGGCGcgcccguccucGCGGG-GCCGCAGCg -3'
miRNA:   3'- -CCGCuauuaaaa---CGUUCgCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 12039 0.69 0.810754
Target:  5'- cGCGAUGcgg--GC-GGCGCUGCAGa -3'
miRNA:   3'- cCGCUAUuaaaaCGuUCGCGGCGUCg -5'
394 5' -48.6 AC_000011.1 + 15995 0.69 0.800411
Target:  5'- uGGCGAUGGccgcUGCcgcCGCCGUGGCc -3'
miRNA:   3'- -CCGCUAUUaaa-ACGuucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 27221 0.69 0.798317
Target:  5'- cGGCGAgaucc---CGAGCGaaGCAGCg -3'
miRNA:   3'- -CCGCUauuaaaacGUUCGCggCGUCG- -5'
394 5' -48.6 AC_000011.1 + 10885 0.69 0.768194
Target:  5'- gGGUGGUGGgggcGCAucUGCCGCAGUa -3'
miRNA:   3'- -CCGCUAUUaaaaCGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 24014 0.7 0.745866
Target:  5'- cGGCGcgGGUgcgGUuGGCGCgGCAGg -3'
miRNA:   3'- -CCGCuaUUAaaaCGuUCGCGgCGUCg -5'
394 5' -48.6 AC_000011.1 + 15851 0.7 0.745866
Target:  5'- uGGCGGggg---UGCuccGGUGCCGCcgGGCg -3'
miRNA:   3'- -CCGCUauuaaaACGu--UCGCGGCG--UCG- -5'
394 5' -48.6 AC_000011.1 + 764 0.7 0.721839
Target:  5'- aGGCGGUAAaugauuuUUUUaGCGAugccGCGCUGCuAGCu -3'
miRNA:   3'- -CCGCUAUU-------AAAA-CGUU----CGCGGCG-UCG- -5'
394 5' -48.6 AC_000011.1 + 21384 0.7 0.722995
Target:  5'- -aCGAgggcc-UGCu-GCGCCGCAGCg -3'
miRNA:   3'- ccGCUauuaaaACGuuCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13428 0.7 0.743601
Target:  5'- uGGCGGccucgg-GCAc-CGCCGCGGCa -3'
miRNA:   3'- -CCGCUauuaaaaCGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13929 0.71 0.687925
Target:  5'- aGGCGAUGGcg--GCGgcGGCGauGCAGCc -3'
miRNA:   3'- -CCGCUAUUaaaaCGU--UCGCggCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21464 0.72 0.640345
Target:  5'- aGCGGUccucGGUg--GCcaGGGCGCUGCGGCg -3'
miRNA:   3'- cCGCUA----UUAaaaCG--UUCGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.