Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
394 | 5' | -48.6 | AC_000011.1 | + | 15339 | 0.68 | 0.820876 |
Target: 5'- cGGUGGUAAUg--GUggGCGCgGgCGGg -3' miRNA: 3'- -CCGCUAUUAaaaCGuuCGCGgC-GUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15588 | 0.66 | 0.903808 |
Target: 5'- uGGCGAgcgccuccguacaucUUGCuGGCGCgCGCAGg -3' miRNA: 3'- -CCGCUauuaa----------AACGuUCGCG-GCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15758 | 0.68 | 0.858902 |
Target: 5'- cGGCGuccacGGUggaGaCGGGCGCgGCGGCg -3' miRNA: 3'- -CCGCua---UUAaaaC-GUUCGCGgCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15851 | 0.7 | 0.745866 |
Target: 5'- uGGCGGggg---UGCuccGGUGCCGCcgGGCg -3' miRNA: 3'- -CCGCUauuaaaACGu--UCGCGGCG--UCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 15995 | 0.69 | 0.800411 |
Target: 5'- uGGCGAUGGccgcUGCcgcCGCCGUGGCc -3' miRNA: 3'- -CCGCUAUUaaa-ACGuucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 16398 | 0.67 | 0.881269 |
Target: 5'- cGGgGAUGAUgauauucuggaGCAGGCGgCCG-AGCg -3' miRNA: 3'- -CCgCUAUUAaaa--------CGUUCGC-GGCgUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 16437 | 0.66 | 0.914422 |
Target: 5'- gGGCGA--GUUUgcuuacgGCAAGCgcaGCCGUuccGCa -3' miRNA: 3'- -CCGCUauUAAAa------CGUUCG---CGGCGu--CG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17004 | 0.72 | 0.628395 |
Target: 5'- cGCGGUAGaa--GCGcGUGCCGCGGUa -3' miRNA: 3'- cCGCUAUUaaaaCGUuCGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17050 | 0.68 | 0.840405 |
Target: 5'- uGGUGcgGAgagUGUAc-CGCCGCGGCc -3' miRNA: 3'- -CCGCuaUUaaaACGUucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17085 | 0.73 | 0.580754 |
Target: 5'- gGGCGGcaggGGUggUUGCAgcGGCGgUGCGGCg -3' miRNA: 3'- -CCGCUa---UUAa-AACGU--UCGCgGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17160 | 0.75 | 0.434388 |
Target: 5'- uGGCGAUGcucgggUGguAGCGCgcgCGCGGCa -3' miRNA: 3'- -CCGCUAUuaaa--ACguUCGCG---GCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17360 | 0.66 | 0.914422 |
Target: 5'- cGGCGAUGAUgggGaucAGCGCgGgCAGg -3' miRNA: 3'- -CCGCUAUUAaaaCgu-UCGCGgC-GUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 18381 | 0.66 | 0.906709 |
Target: 5'- cGGCGAUG----UGCAuguaCGCCcacugggGCAGCa -3' miRNA: 3'- -CCGCUAUuaaaACGUuc--GCGG-------CGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21384 | 0.7 | 0.722995 |
Target: 5'- -aCGAgggcc-UGCu-GCGCCGCAGCg -3' miRNA: 3'- ccGCUauuaaaACGuuCGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21464 | 0.72 | 0.640345 |
Target: 5'- aGCGGUccucGGUg--GCcaGGGCGCUGCGGCg -3' miRNA: 3'- cCGCUA----UUAaaaCG--UUCGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21572 | 0.66 | 0.932283 |
Target: 5'- gGGCGGUcgggccagUGCAcgaAGCGUgcaggaacaUGCAGCa -3' miRNA: 3'- -CCGCUAuuaaa---ACGU---UCGCG---------GCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21745 | 0.66 | 0.921094 |
Target: 5'- aGGCGGUGGccuucuCGAuGCGCgCGCGGUg -3' miRNA: 3'- -CCGCUAUUaaaac-GUU-CGCG-GCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21953 | 0.67 | 0.892477 |
Target: 5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3' miRNA: 3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 22538 | 0.78 | 0.303445 |
Target: 5'- uGGUGGUcccg-UGCAGGCaCCGCAGCu -3' miRNA: 3'- -CCGCUAuuaaaACGUUCGcGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 23907 | 0.66 | 0.907426 |
Target: 5'- aGGCGcgGGUUgggcucGCAGGUGCCauuggGCuGGCg -3' miRNA: 3'- -CCGCuaUUAAaa----CGUUCGCGG-----CG-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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