miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 5' -48.6 AC_000011.1 + 75 0.66 0.907426
Target:  5'- gGGCGGUGAUUggucgaggGaUGAGCGaCCGUuaggGGCg -3'
miRNA:   3'- -CCGCUAUUAAaa------C-GUUCGC-GGCG----UCG- -5'
394 5' -48.6 AC_000011.1 + 764 0.7 0.721839
Target:  5'- aGGCGGUAAaugauuuUUUUaGCGAugccGCGCUGCuAGCu -3'
miRNA:   3'- -CCGCUAUU-------AAAA-CGUU----CGCGGCG-UCG- -5'
394 5' -48.6 AC_000011.1 + 943 0.75 0.444931
Target:  5'- aGCGAUGAUgaggacgaGCAGGCGauccagaaCGCAGCg -3'
miRNA:   3'- cCGCUAUUAaaa-----CGUUCGCg-------GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 2273 0.67 0.892477
Target:  5'- gGGUcuGAUGAguc-GCAAGCGCC-CAGa -3'
miRNA:   3'- -CCG--CUAUUaaaaCGUUCGCGGcGUCg -5'
394 5' -48.6 AC_000011.1 + 3730 0.67 0.876284
Target:  5'- uGGCGGcaga--UGC-AGCaGCUGCGGCg -3'
miRNA:   3'- -CCGCUauuaaaACGuUCG-CGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 5296 0.66 0.910263
Target:  5'- aGCGcacccuc-GCAAGCGCC-CAGCc -3'
miRNA:   3'- cCGCuauuaaaaCGUUCGCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 5462 0.72 0.652286
Target:  5'- gGGCGuag-----GCGuccGCGCCGCAGUg -3'
miRNA:   3'- -CCGCuauuaaaaCGUu--CGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 8510 0.73 0.592616
Target:  5'- gGGCGGcAGgg--GCAcgucGGCGCCGCGcGCg -3'
miRNA:   3'- -CCGCUaUUaaaaCGU----UCGCGGCGU-CG- -5'
394 5' -48.6 AC_000011.1 + 8949 0.66 0.914422
Target:  5'- uGGCGcgugaagaccgcGUAGU--UGCAgaGGCGCUGUAGa -3'
miRNA:   3'- -CCGC------------UAUUAaaACGU--UCGCGGCGUCg -5'
394 5' -48.6 AC_000011.1 + 9286 0.67 0.884533
Target:  5'- uGGCGGggGAggggGCcuGCGUCGcCGGCg -3'
miRNA:   3'- -CCGCUa-UUaaaaCGuuCGCGGC-GUCG- -5'
394 5' -48.6 AC_000011.1 + 9384 0.69 0.767092
Target:  5'- cGGCGcgcccguccucGCGGG-GCCGCAGCg -3'
miRNA:   3'- -CCGCuauuaaaa---CGUUCgCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 10262 0.67 0.90011
Target:  5'- cGGCGGUGG---UGgAGGCG-CGCGGg -3'
miRNA:   3'- -CCGCUAUUaaaACgUUCGCgGCGUCg -5'
394 5' -48.6 AC_000011.1 + 10586 0.66 0.921094
Target:  5'- aGGCcgGAUGAgacuaGUAAGCGCggaaaGCGGCc -3'
miRNA:   3'- -CCG--CUAUUaaaa-CGUUCGCGg----CGUCG- -5'
394 5' -48.6 AC_000011.1 + 10885 0.69 0.768194
Target:  5'- gGGUGGUGGgggcGCAucUGCCGCAGUa -3'
miRNA:   3'- -CCGCUAUUaaaaCGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 11765 0.73 0.580754
Target:  5'- uGCGGUGAgcgccaGCAGGCGgCGCgAGCu -3'
miRNA:   3'- cCGCUAUUaaaa--CGUUCGCgGCG-UCG- -5'
394 5' -48.6 AC_000011.1 + 12039 0.69 0.810754
Target:  5'- cGCGAUGcgg--GC-GGCGCUGCAGa -3'
miRNA:   3'- cCGCUAUuaaaaCGuUCGCGGCGUCg -5'
394 5' -48.6 AC_000011.1 + 13342 0.67 0.892477
Target:  5'- cGGCGcUGuccggccGCGAGggugcUGCCGCGGCg -3'
miRNA:   3'- -CCGCuAUuaaaa--CGUUC-----GCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13428 0.7 0.743601
Target:  5'- uGGCGGccucgg-GCAc-CGCCGCGGCa -3'
miRNA:   3'- -CCGCUauuaaaaCGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13929 0.71 0.687925
Target:  5'- aGGCGAUGGcg--GCGgcGGCGauGCAGCc -3'
miRNA:   3'- -CCGCUAUUaaaaCGU--UCGCggCGUCG- -5'
394 5' -48.6 AC_000011.1 + 14826 1.16 0.000887
Target:  5'- gGGCGAUAAUUUUGCAAGCGCCGCAGCa -3'
miRNA:   3'- -CCGCUAUUAAAACGUUCGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.