Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
394 | 5' | -48.6 | AC_000011.1 | + | 75 | 0.66 | 0.907426 |
Target: 5'- gGGCGGUGAUUggucgaggGaUGAGCGaCCGUuaggGGCg -3' miRNA: 3'- -CCGCUAUUAAaa------C-GUUCGC-GGCG----UCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 17050 | 0.68 | 0.840405 |
Target: 5'- uGGUGcgGAgagUGUAc-CGCCGCGGCc -3' miRNA: 3'- -CCGCuaUUaaaACGUucGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 25176 | 0.67 | 0.877122 |
Target: 5'- cGGCaccuucgagUUGCAAGgGCC-CAGCg -3' miRNA: 3'- -CCGcuauuaa--AACGUUCgCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 16398 | 0.67 | 0.881269 |
Target: 5'- cGGgGAUGAUgauauucuggaGCAGGCGgCCG-AGCg -3' miRNA: 3'- -CCgCUAUUAaaa--------CGUUCGC-GGCgUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 9286 | 0.67 | 0.884533 |
Target: 5'- uGGCGGggGAggggGCcuGCGUCGcCGGCg -3' miRNA: 3'- -CCGCUa-UUaaaaCGuuCGCGGC-GUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 2273 | 0.67 | 0.892477 |
Target: 5'- gGGUcuGAUGAguc-GCAAGCGCC-CAGa -3' miRNA: 3'- -CCG--CUAUUaaaaCGUUCGCGGcGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21953 | 0.67 | 0.892477 |
Target: 5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3' miRNA: 3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 13342 | 0.67 | 0.892477 |
Target: 5'- cGGCGcUGuccggccGCGAGggugcUGCCGCGGCg -3' miRNA: 3'- -CCGCuAUuaaaa--CGUUC-----GCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 10262 | 0.67 | 0.90011 |
Target: 5'- cGGCGGUGG---UGgAGGCG-CGCGGg -3' miRNA: 3'- -CCGCUAUUaaaACgUUCGCgGCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 12039 | 0.69 | 0.810754 |
Target: 5'- cGCGAUGcgg--GC-GGCGCUGCAGa -3' miRNA: 3'- cCGCUAUuaaaaCGuUCGCGGCGUCg -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 9384 | 0.69 | 0.767092 |
Target: 5'- cGGCGcgcccguccucGCGGG-GCCGCAGCg -3' miRNA: 3'- -CCGCuauuaaaa---CGUUCgCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 21384 | 0.7 | 0.722995 |
Target: 5'- -aCGAgggcc-UGCu-GCGCCGCAGCg -3' miRNA: 3'- ccGCUauuaaaACGuuCGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 22538 | 0.78 | 0.303445 |
Target: 5'- uGGUGGUcccg-UGCAGGCaCCGCAGCu -3' miRNA: 3'- -CCGCUAuuaaaACGUUCGcGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 943 | 0.75 | 0.444931 |
Target: 5'- aGCGAUGAUgaggacgaGCAGGCGauccagaaCGCAGCg -3' miRNA: 3'- cCGCUAUUAaaa-----CGUUCGCg-------GCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 11765 | 0.73 | 0.580754 |
Target: 5'- uGCGGUGAgcgccaGCAGGCGgCGCgAGCu -3' miRNA: 3'- cCGCUAUUaaaa--CGUUCGCgGCG-UCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 33787 | 0.73 | 0.580754 |
Target: 5'- cGGcCGGUGGUgucGCAucaGGCcCCGCAGCa -3' miRNA: 3'- -CC-GCUAUUAaaaCGU---UCGcGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 8510 | 0.73 | 0.592616 |
Target: 5'- gGGCGGcAGgg--GCAcgucGGCGCCGCGcGCg -3' miRNA: 3'- -CCGCUaUUaaaaCGU----UCGCGGCGU-CG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 5462 | 0.72 | 0.652286 |
Target: 5'- gGGCGuag-----GCGuccGCGCCGCAGUg -3' miRNA: 3'- -CCGCuauuaaaaCGUu--CGCGGCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 13929 | 0.71 | 0.687925 |
Target: 5'- aGGCGAUGGcg--GCGgcGGCGauGCAGCc -3' miRNA: 3'- -CCGCUAUUaaaaCGU--UCGCggCGUCG- -5' |
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394 | 5' | -48.6 | AC_000011.1 | + | 764 | 0.7 | 0.721839 |
Target: 5'- aGGCGGUAAaugauuuUUUUaGCGAugccGCGCUGCuAGCu -3' miRNA: 3'- -CCGCUAUU-------AAAA-CGUU----CGCGGCG-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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