miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 5' -48.6 AC_000011.1 + 14826 1.16 0.000887
Target:  5'- gGGCGAUAAUUUUGCAAGCGCCGCAGCa -3'
miRNA:   3'- -CCGCUAUUAAAACGUUCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 22538 0.78 0.303445
Target:  5'- uGGUGGUcccg-UGCAGGCaCCGCAGCu -3'
miRNA:   3'- -CCGCUAuuaaaACGUUCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 17160 0.75 0.434388
Target:  5'- uGGCGAUGcucgggUGguAGCGCgcgCGCGGCa -3'
miRNA:   3'- -CCGCUAUuaaa--ACguUCGCG---GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 943 0.75 0.444931
Target:  5'- aGCGAUGAUgaggacgaGCAGGCGauccagaaCGCAGCg -3'
miRNA:   3'- cCGCUAUUAaaa-----CGUUCGCg-------GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 26805 0.74 0.533906
Target:  5'- gGGCGGUGAcgacacagGguGGCGCCGCccgccAGCu -3'
miRNA:   3'- -CCGCUAUUaaaa----CguUCGCGGCG-----UCG- -5'
394 5' -48.6 AC_000011.1 + 24062 0.73 0.566585
Target:  5'- aGGCGAUAucagguagGCGGGCGCCGgGa- -3'
miRNA:   3'- -CCGCUAUuaaaa---CGUUCGCGGCgUcg -5'
394 5' -48.6 AC_000011.1 + 11765 0.73 0.580754
Target:  5'- uGCGGUGAgcgccaGCAGGCGgCGCgAGCu -3'
miRNA:   3'- cCGCUAUUaaaa--CGUUCGCgGCG-UCG- -5'
394 5' -48.6 AC_000011.1 + 17085 0.73 0.580754
Target:  5'- gGGCGGcaggGGUggUUGCAgcGGCGgUGCGGCg -3'
miRNA:   3'- -CCGCUa---UUAa-AACGU--UCGCgGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 33787 0.73 0.580754
Target:  5'- cGGcCGGUGGUgucGCAucaGGCcCCGCAGCa -3'
miRNA:   3'- -CC-GCUAUUAaaaCGU---UCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 8510 0.73 0.592616
Target:  5'- gGGCGGcAGgg--GCAcgucGGCGCCGCGcGCg -3'
miRNA:   3'- -CCGCUaUUaaaaCGU----UCGCGGCGU-CG- -5'
394 5' -48.6 AC_000011.1 + 17004 0.72 0.628395
Target:  5'- cGCGGUAGaa--GCGcGUGCCGCGGUa -3'
miRNA:   3'- cCGCUAUUaaaaCGUuCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21464 0.72 0.640345
Target:  5'- aGCGGUccucGGUg--GCcaGGGCGCUGCGGCg -3'
miRNA:   3'- cCGCUA----UUAaaaCG--UUCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 5462 0.72 0.652286
Target:  5'- gGGCGuag-----GCGuccGCGCCGCAGUg -3'
miRNA:   3'- -CCGCuauuaaaaCGUu--CGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13929 0.71 0.687925
Target:  5'- aGGCGAUGGcg--GCGgcGGCGauGCAGCc -3'
miRNA:   3'- -CCGCUAUUaaaaCGU--UCGCggCGUCG- -5'
394 5' -48.6 AC_000011.1 + 764 0.7 0.721839
Target:  5'- aGGCGGUAAaugauuuUUUUaGCGAugccGCGCUGCuAGCu -3'
miRNA:   3'- -CCGCUAUU-------AAAA-CGUU----CGCGGCG-UCG- -5'
394 5' -48.6 AC_000011.1 + 21384 0.7 0.722995
Target:  5'- -aCGAgggcc-UGCu-GCGCCGCAGCg -3'
miRNA:   3'- ccGCUauuaaaACGuuCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 13428 0.7 0.743601
Target:  5'- uGGCGGccucgg-GCAc-CGCCGCGGCa -3'
miRNA:   3'- -CCGCUauuaaaaCGUucGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 15851 0.7 0.745866
Target:  5'- uGGCGGggg---UGCuccGGUGCCGCcgGGCg -3'
miRNA:   3'- -CCGCUauuaaaACGu--UCGCGGCG--UCG- -5'
394 5' -48.6 AC_000011.1 + 24014 0.7 0.745866
Target:  5'- cGGCGcgGGUgcgGUuGGCGCgGCAGg -3'
miRNA:   3'- -CCGCuaUUAaaaCGuUCGCGgCGUCg -5'
394 5' -48.6 AC_000011.1 + 9384 0.69 0.767092
Target:  5'- cGGCGcgcccguccucGCGGG-GCCGCAGCg -3'
miRNA:   3'- -CCGCuauuaaaa---CGUUCgCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.