miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
394 5' -48.6 AC_000011.1 + 34724 0.67 0.884533
Target:  5'- cGGCGAUcggugUGC-AGCGCC-CGGa -3'
miRNA:   3'- -CCGCUAuuaaaACGuUCGCGGcGUCg -5'
394 5' -48.6 AC_000011.1 + 34021 0.66 0.907426
Target:  5'- uGGUGGUucuGUgUUGCAcGUaCUGCAGCg -3'
miRNA:   3'- -CCGCUAu--UAaAACGUuCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 33986 0.66 0.921094
Target:  5'- aGCGAgaucc--GCAuGCGCUGCuGCg -3'
miRNA:   3'- cCGCUauuaaaaCGUuCGCGGCGuCG- -5'
394 5' -48.6 AC_000011.1 + 33787 0.73 0.580754
Target:  5'- cGGcCGGUGGUgucGCAucaGGCcCCGCAGCa -3'
miRNA:   3'- -CC-GCUAUUAaaaCGU---UCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 31526 0.68 0.840405
Target:  5'- uGGCGAaugcgaAGUUggGCGAGuCGCUGCuccgaGGCg -3'
miRNA:   3'- -CCGCUa-----UUAAaaCGUUC-GCGGCG-----UCG- -5'
394 5' -48.6 AC_000011.1 + 28473 0.66 0.927441
Target:  5'- aGCGGUGAUU-----AGCGCCGU-GCa -3'
miRNA:   3'- cCGCUAUUAAaacguUCGCGGCGuCG- -5'
394 5' -48.6 AC_000011.1 + 27221 0.69 0.798317
Target:  5'- cGGCGAgaucc---CGAGCGaaGCAGCg -3'
miRNA:   3'- -CCGCUauuaaaacGUUCGCggCGUCG- -5'
394 5' -48.6 AC_000011.1 + 26805 0.74 0.533906
Target:  5'- gGGCGGUGAcgacacagGguGGCGCCGCccgccAGCu -3'
miRNA:   3'- -CCGCUAUUaaaa----CguUCGCGGCG-----UCG- -5'
394 5' -48.6 AC_000011.1 + 25176 0.67 0.877122
Target:  5'- cGGCaccuucgagUUGCAAGgGCC-CAGCg -3'
miRNA:   3'- -CCGcuauuaa--AACGUUCgCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 25084 0.66 0.921094
Target:  5'- aGGCcaGGUAGUUggcCAGGCGCaGCAGg -3'
miRNA:   3'- -CCG--CUAUUAAaacGUUCGCGgCGUCg -5'
394 5' -48.6 AC_000011.1 + 24062 0.73 0.566585
Target:  5'- aGGCGAUAucagguagGCGGGCGCCGgGa- -3'
miRNA:   3'- -CCGCUAUuaaaa---CGUUCGCGGCgUcg -5'
394 5' -48.6 AC_000011.1 + 24014 0.7 0.745866
Target:  5'- cGGCGcgGGUgcgGUuGGCGCgGCAGg -3'
miRNA:   3'- -CCGCuaUUAaaaCGuUCGCGgCGUCg -5'
394 5' -48.6 AC_000011.1 + 23907 0.66 0.907426
Target:  5'- aGGCGcgGGUUgggcucGCAGGUGCCauuggGCuGGCg -3'
miRNA:   3'- -CCGCuaUUAAaa----CGUUCGCGG-----CG-UCG- -5'
394 5' -48.6 AC_000011.1 + 22538 0.78 0.303445
Target:  5'- uGGUGGUcccg-UGCAGGCaCCGCAGCu -3'
miRNA:   3'- -CCGCUAuuaaaACGUUCGcGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21953 0.67 0.892477
Target:  5'- cGCGcag---UUGCAgGGCGCC-CAGCa -3'
miRNA:   3'- cCGCuauuaaAACGU-UCGCGGcGUCG- -5'
394 5' -48.6 AC_000011.1 + 21745 0.66 0.921094
Target:  5'- aGGCGGUGGccuucuCGAuGCGCgCGCGGUg -3'
miRNA:   3'- -CCGCUAUUaaaac-GUU-CGCG-GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21572 0.66 0.932283
Target:  5'- gGGCGGUcgggccagUGCAcgaAGCGUgcaggaacaUGCAGCa -3'
miRNA:   3'- -CCGCUAuuaaa---ACGU---UCGCG---------GCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21464 0.72 0.640345
Target:  5'- aGCGGUccucGGUg--GCcaGGGCGCUGCGGCg -3'
miRNA:   3'- cCGCUA----UUAaaaCG--UUCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 21384 0.7 0.722995
Target:  5'- -aCGAgggcc-UGCu-GCGCCGCAGCg -3'
miRNA:   3'- ccGCUauuaaaACGuuCGCGGCGUCG- -5'
394 5' -48.6 AC_000011.1 + 18381 0.66 0.906709
Target:  5'- cGGCGAUG----UGCAuguaCGCCcacugggGCAGCa -3'
miRNA:   3'- -CCGCUAUuaaaACGUuc--GCGG-------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.