Results 41 - 52 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
394 | 5' | -48.6 | AC_000011.1 | + | 24014 | 0.7 | 0.745866 |
Target: 5'- cGGCGcgGGUgcgGUuGGCGCgGCAGg -3' miRNA: 3'- -CCGCuaUUAaaaCGuUCGCGgCGUCg -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 24062 | 0.73 | 0.566585 |
Target: 5'- aGGCGAUAucagguagGCGGGCGCCGgGa- -3' miRNA: 3'- -CCGCUAUuaaaa---CGUUCGCGGCgUcg -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 25084 | 0.66 | 0.921094 |
Target: 5'- aGGCcaGGUAGUUggcCAGGCGCaGCAGg -3' miRNA: 3'- -CCG--CUAUUAAaacGUUCGCGgCGUCg -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 25176 | 0.67 | 0.877122 |
Target: 5'- cGGCaccuucgagUUGCAAGgGCC-CAGCg -3' miRNA: 3'- -CCGcuauuaa--AACGUUCgCGGcGUCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 26805 | 0.74 | 0.533906 |
Target: 5'- gGGCGGUGAcgacacagGguGGCGCCGCccgccAGCu -3' miRNA: 3'- -CCGCUAUUaaaa----CguUCGCGGCG-----UCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 27221 | 0.69 | 0.798317 |
Target: 5'- cGGCGAgaucc---CGAGCGaaGCAGCg -3' miRNA: 3'- -CCGCUauuaaaacGUUCGCggCGUCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 28473 | 0.66 | 0.927441 |
Target: 5'- aGCGGUGAUU-----AGCGCCGU-GCa -3' miRNA: 3'- cCGCUAUUAAaacguUCGCGGCGuCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 31526 | 0.68 | 0.840405 |
Target: 5'- uGGCGAaugcgaAGUUggGCGAGuCGCUGCuccgaGGCg -3' miRNA: 3'- -CCGCUa-----UUAAaaCGUUC-GCGGCG-----UCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 33787 | 0.73 | 0.580754 |
Target: 5'- cGGcCGGUGGUgucGCAucaGGCcCCGCAGCa -3' miRNA: 3'- -CC-GCUAUUAaaaCGU---UCGcGGCGUCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 33986 | 0.66 | 0.921094 |
Target: 5'- aGCGAgaucc--GCAuGCGCUGCuGCg -3' miRNA: 3'- cCGCUauuaaaaCGUuCGCGGCGuCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 34021 | 0.66 | 0.907426 |
Target: 5'- uGGUGGUucuGUgUUGCAcGUaCUGCAGCg -3' miRNA: 3'- -CCGCUAu--UAaAACGUuCGcGGCGUCG- -5' |
|||||||
394 | 5' | -48.6 | AC_000011.1 | + | 34724 | 0.67 | 0.884533 |
Target: 5'- cGGCGAUcggugUGC-AGCGCC-CGGa -3' miRNA: 3'- -CCGCUAuuaaaACGuUCGCGGcGUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home