miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 55173 0.73 0.667121
Target:  5'- -cGCGCGCGGccaccGCCUCCAUGGCGUCc- -3'
miRNA:   3'- gaCGCGUGCU-----UGGGGGUGUUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 55986 0.7 0.852618
Target:  5'- -gGCGCGCaGGGCgCCCAuCAGCGccUCGAa -3'
miRNA:   3'- gaCGCGUG-CUUGgGGGU-GUUGU--AGCU- -5'
3962 3' -54.4 NC_001650.1 + 58721 0.66 0.964313
Target:  5'- -gGCGCACuuucGCCCCCcgACcuGACAUCGc -3'
miRNA:   3'- gaCGCGUGcu--UGGGGG--UG--UUGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 59671 0.72 0.752422
Target:  5'- gCUGUGCGCGGcGCUCCCucggcgccgaacuCGACAUCGGc -3'
miRNA:   3'- -GACGCGUGCU-UGGGGGu------------GUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 59854 0.68 0.913737
Target:  5'- aUGgGCGCGAcCCCCgGCGAUAcuguuuuUCGGg -3'
miRNA:   3'- gACgCGUGCUuGGGGgUGUUGU-------AGCU- -5'
3962 3' -54.4 NC_001650.1 + 62237 0.68 0.902184
Target:  5'- gUGcCGCcUGAcccGCCCCCGCAGCAUgGc -3'
miRNA:   3'- gAC-GCGuGCU---UGGGGGUGUUGUAgCu -5'
3962 3' -54.4 NC_001650.1 + 64392 0.68 0.927644
Target:  5'- gCUGgGCGCGGACgccgcgCCCCACAcccacaggauuagucACAUCu- -3'
miRNA:   3'- -GACgCGUGCUUG------GGGGUGU---------------UGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 71425 0.67 0.953442
Target:  5'- -aGCGCAUGGAggCCCACGGgcUCGAg -3'
miRNA:   3'- gaCGCGUGCUUggGGGUGUUguAGCU- -5'
3962 3' -54.4 NC_001650.1 + 73302 0.68 0.907762
Target:  5'- -cGCGCACGuGGCCUCCAUcaccacgGACAUgGGc -3'
miRNA:   3'- gaCGCGUGC-UUGGGGGUG-------UUGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 73602 0.66 0.960909
Target:  5'- gUGCGUggucucguGCGAG-CCCUACAACGcCGAg -3'
miRNA:   3'- gACGCG--------UGCUUgGGGGUGUUGUaGCU- -5'
3962 3' -54.4 NC_001650.1 + 75293 0.67 0.948951
Target:  5'- -gGCGCGCGcAaaccuggaacagcGCCCCCcuGCGGCcgCGGa -3'
miRNA:   3'- gaCGCGUGC-U-------------UGGGGG--UGUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 76205 0.66 0.964313
Target:  5'- -aGUGCAgGGGCgucuCCCUgggacGCAGCGUCGAu -3'
miRNA:   3'- gaCGCGUgCUUG----GGGG-----UGUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 76643 0.66 0.963982
Target:  5'- -gGCGCGCGccuucucGGCCCCCAgGAUGUa-- -3'
miRNA:   3'- gaCGCGUGC-------UUGGGGGUgUUGUAgcu -5'
3962 3' -54.4 NC_001650.1 + 78852 0.71 0.799707
Target:  5'- -cGCGgACGGggacgggagguacgACCCCCACAACAUa-- -3'
miRNA:   3'- gaCGCgUGCU--------------UGGGGGUGUUGUAgcu -5'
3962 3' -54.4 NC_001650.1 + 78963 0.68 0.90837
Target:  5'- -gGCGCA-GAugCCCCGCGGCccagagagCGAg -3'
miRNA:   3'- gaCGCGUgCUugGGGGUGUUGua------GCU- -5'
3962 3' -54.4 NC_001650.1 + 82870 0.67 0.945069
Target:  5'- -aGCGCGCcuGCCCCCcgACAGgGUCu- -3'
miRNA:   3'- gaCGCGUGcuUGGGGG--UGUUgUAGcu -5'
3962 3' -54.4 NC_001650.1 + 90185 0.69 0.889121
Target:  5'- -gGCGCugGcGCCCCCugGCGGCggUGGg -3'
miRNA:   3'- gaCGCGugCuUGGGGG--UGUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 93530 0.69 0.875161
Target:  5'- -aGCgGCGCGGugCCCUGCGugGUCu- -3'
miRNA:   3'- gaCG-CGUGCUugGGGGUGUugUAGcu -5'
3962 3' -54.4 NC_001650.1 + 94862 0.66 0.964313
Target:  5'- -gGUGguCGAggACCCCCACGGguUCa- -3'
miRNA:   3'- gaCGCguGCU--UGGGGGUGUUguAGcu -5'
3962 3' -54.4 NC_001650.1 + 95228 0.67 0.953442
Target:  5'- ---aGCGCGAcCCCUCGCGGCAggccgCGGg -3'
miRNA:   3'- gacgCGUGCUuGGGGGUGUUGUa----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.