miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 11624 0.66 0.964313
Target:  5'- aCUGCGCAagcgggugGGACCCUCugAACAc--- -3'
miRNA:   3'- -GACGCGUg-------CUUGGGGGugUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 14252 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 14284 0.66 0.970487
Target:  5'- cCUGCccaCAUGGACCCCUGCccACAUgGAc -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGu-UGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 14316 0.7 0.844699
Target:  5'- cCUGCccaCAUGGACCCCCACAugGa--- -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGUugUagcu -5'
3962 3' -54.4 NC_001650.1 + 19846 0.68 0.902184
Target:  5'- uCUGCaGCGCGGACCacaCUCGCAGCAg-GAa -3'
miRNA:   3'- -GACG-CGUGCUUGG---GGGUGUUGUagCU- -5'
3962 3' -54.4 NC_001650.1 + 22638 0.68 0.90837
Target:  5'- -aGCGCGCGGggggcgcguacGCCUCgCACGACAgCGGc -3'
miRNA:   3'- gaCGCGUGCU-----------UGGGG-GUGUUGUaGCU- -5'
3962 3' -54.4 NC_001650.1 + 23181 0.66 0.967504
Target:  5'- -cGCGCccuccaGGGuCCCCUACAACAgcagCGAc -3'
miRNA:   3'- gaCGCGug----CUU-GGGGGUGUUGUa---GCU- -5'
3962 3' -54.4 NC_001650.1 + 24551 0.69 0.875161
Target:  5'- -cGCGCugGAcGCgCUCCGCGAC-UCGGg -3'
miRNA:   3'- gaCGCGugCU-UG-GGGGUGUUGuAGCU- -5'
3962 3' -54.4 NC_001650.1 + 25842 0.69 0.889121
Target:  5'- -aGCGU-CGAgGCCCCCACcACAUCu- -3'
miRNA:   3'- gaCGCGuGCU-UGGGGGUGuUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 29446 0.68 0.925518
Target:  5'- -aGCG-ACGGggacaACCCCCACGugAUCa- -3'
miRNA:   3'- gaCGCgUGCU-----UGGGGGUGUugUAGcu -5'
3962 3' -54.4 NC_001650.1 + 37634 0.72 0.756245
Target:  5'- gUGCGCGCGGggGCCCCC----CGUCGGg -3'
miRNA:   3'- gACGCGUGCU--UGGGGGuguuGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 37752 0.66 0.964313
Target:  5'- -gGCGCcCGGGCCgCCUAgGGCcgCGGg -3'
miRNA:   3'- gaCGCGuGCUUGG-GGGUgUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 38810 0.71 0.802378
Target:  5'- uUGCGCugGAgggcuaccACCCCCACGcggcCAUCc- -3'
miRNA:   3'- gACGCGugCU--------UGGGGGUGUu---GUAGcu -5'
3962 3' -54.4 NC_001650.1 + 39516 0.66 0.963315
Target:  5'- uCUGCGCAUGucacgugauuucaaAACCCCgCAUGcCAUCGc -3'
miRNA:   3'- -GACGCGUGC--------------UUGGGG-GUGUuGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 41629 0.73 0.677253
Target:  5'- -cGUGCAUGGACCCCCAgAugGacUUGAa -3'
miRNA:   3'- gaCGCGUGCUUGGGGGUgUugU--AGCU- -5'
3962 3' -54.4 NC_001650.1 + 42589 0.67 0.940535
Target:  5'- -cGCGCGgGGGCCCCCGaGGC--CGAa -3'
miRNA:   3'- gaCGCGUgCUUGGGGGUgUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 48513 0.69 0.867855
Target:  5'- -gGCGCACG-ACCUCUACucuaagauCAUCGGg -3'
miRNA:   3'- gaCGCGUGCuUGGGGGUGuu------GUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 52017 0.66 0.960909
Target:  5'- -cGCGCAgCaGGCaCCCCACGGCcaccUCGAa -3'
miRNA:   3'- gaCGCGU-GcUUG-GGGGUGUUGu---AGCU- -5'
3962 3' -54.4 NC_001650.1 + 52353 0.72 0.717328
Target:  5'- -gGgGCGCGAacccgucugACCCCCACAgggcuugggugACGUCGGc -3'
miRNA:   3'- gaCgCGUGCU---------UGGGGGUGU-----------UGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 53930 0.67 0.940535
Target:  5'- -gGCGUugGccucCCCCCGCGAgGUCu- -3'
miRNA:   3'- gaCGCGugCuu--GGGGGUGUUgUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.