miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 108354 1.09 0.005215
Target:  5'- cCUGCGCACGAACCCCCACAACAUCGAc -3'
miRNA:   3'- -GACGCGUGCUUGGGGGUGUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 110545 0.78 0.414394
Target:  5'- -gGCGCGCGAgcaacagccGCCCCCGCAACAa--- -3'
miRNA:   3'- gaCGCGUGCU---------UGGGGGUGUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 115142 0.76 0.535691
Target:  5'- cCUGUGCGCGcuCCCCUACuGCcgCGAg -3'
miRNA:   3'- -GACGCGUGCuuGGGGGUGuUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 145553 0.74 0.64678
Target:  5'- -cGUGCGCGu-CCCCCAgGACGUgGAu -3'
miRNA:   3'- gaCGCGUGCuuGGGGGUgUUGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 120892 0.74 0.65696
Target:  5'- -gGCGCGCGAcaacGCCCCCaaGCAccGCcgCGAg -3'
miRNA:   3'- gaCGCGUGCU----UGGGGG--UGU--UGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 159287 0.74 0.65696
Target:  5'- -gGCaGCAgGGACCCCCGCAGgGUCc- -3'
miRNA:   3'- gaCG-CGUgCUUGGGGGUGUUgUAGcu -5'
3962 3' -54.4 NC_001650.1 + 55173 0.73 0.667121
Target:  5'- -cGCGCGCGGccaccGCCUCCAUGGCGUCc- -3'
miRNA:   3'- gaCGCGUGCU-----UGGGGGUGUUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 136155 0.73 0.677253
Target:  5'- aUGCGCcUGAAggcgcCCCCCGCGGCcUCGAc -3'
miRNA:   3'- gACGCGuGCUU-----GGGGGUGUUGuAGCU- -5'
3962 3' -54.4 NC_001650.1 + 116680 0.73 0.677253
Target:  5'- -cGCGCGCGAGCCcgCCCGCucggGGCAUCc- -3'
miRNA:   3'- gaCGCGUGCUUGG--GGGUG----UUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 41629 0.73 0.677253
Target:  5'- -cGUGCAUGGACCCCCAgAugGacUUGAa -3'
miRNA:   3'- gaCGCGUGCUUGGGGGUgUugU--AGCU- -5'
3962 3' -54.4 NC_001650.1 + 52353 0.72 0.717328
Target:  5'- -gGgGCGCGAacccgucugACCCCCACAgggcuugggugACGUCGGc -3'
miRNA:   3'- gaCgCGUGCU---------UGGGGGUGU-----------UGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 115654 0.72 0.746656
Target:  5'- -cGCGUGCG-ACCCCCGCGGCGc--- -3'
miRNA:   3'- gaCGCGUGCuUGGGGGUGUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 152488 0.72 0.746656
Target:  5'- -gGgGCAUG-GCgCCCGCGGCGUCGAg -3'
miRNA:   3'- gaCgCGUGCuUGgGGGUGUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 59671 0.72 0.752422
Target:  5'- gCUGUGCGCGGcGCUCCCucggcgccgaacuCGACAUCGGc -3'
miRNA:   3'- -GACGCGUGCU-UGGGGGu------------GUUGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 37634 0.72 0.756245
Target:  5'- gUGCGCGCGGggGCCCCC----CGUCGGg -3'
miRNA:   3'- gACGCGUGCU--UGGGGGuguuGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 100999 0.72 0.764782
Target:  5'- -cGCGCGCGAccGCCCCCcuguucagcuuggACAGCAgggCGc -3'
miRNA:   3'- gaCGCGUGCU--UGGGGG-------------UGUUGUa--GCu -5'
3962 3' -54.4 NC_001650.1 + 78852 0.71 0.799707
Target:  5'- -cGCGgACGGggacgggagguacgACCCCCACAACAUa-- -3'
miRNA:   3'- gaCGCgUGCU--------------UGGGGGUGUUGUAgcu -5'
3962 3' -54.4 NC_001650.1 + 38810 0.71 0.802378
Target:  5'- uUGCGCugGAgggcuaccACCCCCACGcggcCAUCc- -3'
miRNA:   3'- gACGCGugCU--------UGGGGGUGUu---GUAGcu -5'
3962 3' -54.4 NC_001650.1 + 110667 0.71 0.802378
Target:  5'- -cGCGCACGcGCCCCCucggGCGAUGcCGGa -3'
miRNA:   3'- gaCGCGUGCuUGGGGG----UGUUGUaGCU- -5'
3962 3' -54.4 NC_001650.1 + 100101 0.71 0.802378
Target:  5'- cCUGCGgACGGccucgcacGCCgCCGCGAUAUCGu -3'
miRNA:   3'- -GACGCgUGCU--------UGGgGGUGUUGUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.