miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 3' -54.4 NC_001650.1 + 73302 0.68 0.907762
Target:  5'- -cGCGCACGuGGCCUCCAUcaccacgGACAUgGGc -3'
miRNA:   3'- gaCGCGUGC-UUGGGGGUG-------UUGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 93530 0.69 0.875161
Target:  5'- -aGCgGCGCGGugCCCUGCGugGUCu- -3'
miRNA:   3'- gaCG-CGUGCUugGGGGUGUugUAGcu -5'
3962 3' -54.4 NC_001650.1 + 24551 0.69 0.875161
Target:  5'- -cGCGCugGAcGCgCUCCGCGAC-UCGGg -3'
miRNA:   3'- gaCGCGugCU-UG-GGGGUGUUGuAGCU- -5'
3962 3' -54.4 NC_001650.1 + 131977 0.69 0.882251
Target:  5'- gCUGUggaGCACGcuGCCCCCGCugGACAUgGGc -3'
miRNA:   3'- -GACG---CGUGCu-UGGGGGUG--UUGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 109376 0.69 0.882251
Target:  5'- -cGCGgACGGGCCCCUggACAccgGCAUCu- -3'
miRNA:   3'- gaCGCgUGCUUGGGGG--UGU---UGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 25842 0.69 0.889121
Target:  5'- -aGCGU-CGAgGCCCCCACcACAUCu- -3'
miRNA:   3'- gaCGCGuGCU-UGGGGGUGuUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 109418 0.69 0.889121
Target:  5'- gUGCGUGCGGcuCCCCCACAccuACAaggUGAa -3'
miRNA:   3'- gACGCGUGCUu-GGGGGUGU---UGUa--GCU- -5'
3962 3' -54.4 NC_001650.1 + 90185 0.69 0.889121
Target:  5'- -gGCGCugGcGCCCCCugGCGGCggUGGg -3'
miRNA:   3'- gaCGCGugCuUGGGGG--UGUUGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 128501 0.69 0.895113
Target:  5'- gCUGCGCAUGGagaagaaGCCCCUgaugGCGGCcgCGc -3'
miRNA:   3'- -GACGCGUGCU-------UGGGGG----UGUUGuaGCu -5'
3962 3' -54.4 NC_001650.1 + 181023 0.7 0.844699
Target:  5'- cCUGCccaCAUGGACCCCCACAugGa--- -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGUugUagcu -5'
3962 3' -54.4 NC_001650.1 + 125562 0.7 0.844699
Target:  5'- -gGCGCACGGccGCCgCCCGaaaGACGUCu- -3'
miRNA:   3'- gaCGCGUGCU--UGG-GGGUg--UUGUAGcu -5'
3962 3' -54.4 NC_001650.1 + 14316 0.7 0.844699
Target:  5'- cCUGCccaCAUGGACCCCCACAugGa--- -3'
miRNA:   3'- -GACGc--GUGCUUGGGGGUGUugUagcu -5'
3962 3' -54.4 NC_001650.1 + 110545 0.78 0.414394
Target:  5'- -gGCGCGCGAgcaacagccGCCCCCGCAACAa--- -3'
miRNA:   3'- gaCGCGUGCU---------UGGGGGUGUUGUagcu -5'
3962 3' -54.4 NC_001650.1 + 145553 0.74 0.64678
Target:  5'- -cGUGCGCGu-CCCCCAgGACGUgGAu -3'
miRNA:   3'- gaCGCGUGCuuGGGGGUgUUGUAgCU- -5'
3962 3' -54.4 NC_001650.1 + 120892 0.74 0.65696
Target:  5'- -gGCGCGCGAcaacGCCCCCaaGCAccGCcgCGAg -3'
miRNA:   3'- gaCGCGUGCU----UGGGGG--UGU--UGuaGCU- -5'
3962 3' -54.4 NC_001650.1 + 136155 0.73 0.677253
Target:  5'- aUGCGCcUGAAggcgcCCCCCGCGGCcUCGAc -3'
miRNA:   3'- gACGCGuGCUU-----GGGGGUGUUGuAGCU- -5'
3962 3' -54.4 NC_001650.1 + 37634 0.72 0.756245
Target:  5'- gUGCGCGCGGggGCCCCC----CGUCGGg -3'
miRNA:   3'- gACGCGUGCU--UGGGGGuguuGUAGCU- -5'
3962 3' -54.4 NC_001650.1 + 78852 0.71 0.799707
Target:  5'- -cGCGgACGGggacgggagguacgACCCCCACAACAUa-- -3'
miRNA:   3'- gaCGCgUGCU--------------UGGGGGUGUUGUAgcu -5'
3962 3' -54.4 NC_001650.1 + 100101 0.71 0.802378
Target:  5'- cCUGCGgACGGccucgcacGCCgCCGCGAUAUCGu -3'
miRNA:   3'- -GACGCgUGCU--------UGGgGGUGUUGUAGCu -5'
3962 3' -54.4 NC_001650.1 + 110667 0.71 0.802378
Target:  5'- -cGCGCACGcGCCCCCucggGCGAUGcCGGa -3'
miRNA:   3'- gaCGCGUGCuUGGGGG----UGUUGUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.