miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 5' -51.6 NC_001650.1 + 108398 1.12 0.006311
Target:  5'- aGCCCAUCAUCACGGGGUUCAUAGACGa -3'
miRNA:   3'- -CGGGUAGUAGUGCCCCAAGUAUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 37332 0.81 0.432935
Target:  5'- cGCCCAgagCAggUCACGGGGUUCugcGACGa -3'
miRNA:   3'- -CGGGUa--GU--AGUGCCCCAAGuauCUGC- -5'
3962 5' -51.6 NC_001650.1 + 125299 0.78 0.619956
Target:  5'- cGCCCcaGUCuAUCugGgcGGGUUCGUGGACGu -3'
miRNA:   3'- -CGGG--UAG-UAGugC--CCCAAGUAUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 121092 0.75 0.761581
Target:  5'- cGCCCGUCc---UGGGGUUCcgGGACGc -3'
miRNA:   3'- -CGGGUAGuaguGCCCCAAGuaUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 147373 0.74 0.789824
Target:  5'- aGCCUGUC-UC-CGGGGaUCAUGGugGa -3'
miRNA:   3'- -CGGGUAGuAGuGCCCCaAGUAUCugC- -5'
3962 5' -51.6 NC_001650.1 + 106886 0.74 0.795325
Target:  5'- gGUCUAUCAUCuccaugccgcccuCGGGGUcgUCGUAGAUGg -3'
miRNA:   3'- -CGGGUAGUAGu------------GCCCCA--AGUAUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 101548 0.73 0.849457
Target:  5'- cGCCCGUgGUCaaaggguaccuggGCGGGGUUCAcauGGCu -3'
miRNA:   3'- -CGGGUAgUAG-------------UGCCCCAAGUau-CUGc -5'
3962 5' -51.6 NC_001650.1 + 113940 0.7 0.93517
Target:  5'- cGCCCGUCGcCAUGGGcGaUgGUGGGCa -3'
miRNA:   3'- -CGGGUAGUaGUGCCC-CaAgUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 35661 0.7 0.940032
Target:  5'- uGUUCG-CGUCGagccaGGGGUUCGUGGACc -3'
miRNA:   3'- -CGGGUaGUAGUg----CCCCAAGUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 136070 0.7 0.94731
Target:  5'- cGCCCAgaagauguaggugCAgauggcCGCGGGGgUCAUGGACc -3'
miRNA:   3'- -CGGGUa------------GUa-----GUGCCCCaAGUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 57737 0.7 0.949034
Target:  5'- uGCCCggCcUCGCGGGGUgggc-GACGg -3'
miRNA:   3'- -CGGGuaGuAGUGCCCCAaguauCUGC- -5'
3962 5' -51.6 NC_001650.1 + 5716 0.7 0.953179
Target:  5'- gGUCUGUgAUCAUGGGGggUUGUGGGCa -3'
miRNA:   3'- -CGGGUAgUAGUGCCCCa-AGUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 110687 0.7 0.953179
Target:  5'- cGUCCGcCGUCACGGGGgUCA-GGAUc -3'
miRNA:   3'- -CGGGUaGUAGUGCCCCaAGUaUCUGc -5'
3962 5' -51.6 NC_001650.1 + 172423 0.7 0.953179
Target:  5'- gGUCUGUgAUCAUGGGGggUUGUGGGCa -3'
miRNA:   3'- -CGGGUAgUAGUGCCCCa-AGUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 38186 0.69 0.970494
Target:  5'- uGCUCugguUCAUCAgGGGGUcCAcGGACu -3'
miRNA:   3'- -CGGGu---AGUAGUgCCCCAaGUaUCUGc -5'
3962 5' -51.6 NC_001650.1 + 154025 0.68 0.975165
Target:  5'- gGUCCGUCAggacccccagggccUCGCGGGuGUUC-UGGAgGa -3'
miRNA:   3'- -CGGGUAGU--------------AGUGCCC-CAAGuAUCUgC- -5'
3962 5' -51.6 NC_001650.1 + 175625 0.68 0.97593
Target:  5'- uGCCCAgc--CACGGGGgaguccCAUGGGCc -3'
miRNA:   3'- -CGGGUaguaGUGCCCCaa----GUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 92048 0.68 0.978355
Target:  5'- gGCCCAUCAUCuucaACGGGGaggu--GACc -3'
miRNA:   3'- -CGGGUAGUAG----UGCCCCaaguauCUGc -5'
3962 5' -51.6 NC_001650.1 + 68065 0.68 0.984549
Target:  5'- cGCUCAggGUCAgGGGGcUCAUGaACGg -3'
miRNA:   3'- -CGGGUagUAGUgCCCCaAGUAUcUGC- -5'
3962 5' -51.6 NC_001650.1 + 5913 0.67 0.986114
Target:  5'- uGCCCAgcaaccagggccuUCAUuggcCAUGGGGUUgaGUGGGCa -3'
miRNA:   3'- -CGGGU-------------AGUA----GUGCCCCAAg-UAUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.