Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3962 | 5' | -51.6 | NC_001650.1 | + | 4192 | 0.67 | 0.987858 |
Target: 5'- gGCCCuauaugGUCcuaccgGUCAUGGGGggUCAUGGGgGg -3' miRNA: 3'- -CGGG------UAG------UAGUGCCCCa-AGUAUCUgC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 5618 | 0.67 | 0.991762 |
Target: 5'- uCCCAUUgGUCACaGGGUagaGUGGGCGg -3' miRNA: 3'- cGGGUAG-UAGUGcCCCAag-UAUCUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 5716 | 0.7 | 0.953179 |
Target: 5'- gGUCUGUgAUCAUGGGGggUUGUGGGCa -3' miRNA: 3'- -CGGGUAgUAGUGCCCCa-AGUAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 5913 | 0.67 | 0.986114 |
Target: 5'- uGCCCAgcaaccagggccuUCAUuggcCAUGGGGUUgaGUGGGCa -3' miRNA: 3'- -CGGGU-------------AGUA----GUGCCCCAAg-UAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 29043 | 0.66 | 0.994599 |
Target: 5'- cGCCC-UCGgggCGCGGGGggUGgccGACGu -3' miRNA: 3'- -CGGGuAGUa--GUGCCCCaaGUau-CUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 35661 | 0.7 | 0.940032 |
Target: 5'- uGUUCG-CGUCGagccaGGGGUUCGUGGACc -3' miRNA: 3'- -CGGGUaGUAGUg----CCCCAAGUAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 36329 | 0.67 | 0.989155 |
Target: 5'- uGUCCAagGUCAagguggcCGGGGUggugccCAUAGACa -3' miRNA: 3'- -CGGGUagUAGU-------GCCCCAa-----GUAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 37332 | 0.81 | 0.432935 |
Target: 5'- cGCCCAgagCAggUCACGGGGUUCugcGACGa -3' miRNA: 3'- -CGGGUa--GU--AGUGCCCCAAGuauCUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 38186 | 0.69 | 0.970494 |
Target: 5'- uGCUCugguUCAUCAgGGGGUcCAcGGACu -3' miRNA: 3'- -CGGGu---AGUAGUgCCCCAaGUaUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 57737 | 0.7 | 0.949034 |
Target: 5'- uGCCCggCcUCGCGGGGUgggc-GACGg -3' miRNA: 3'- -CGGGuaGuAGUGCCCCAaguauCUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 62567 | 0.67 | 0.991762 |
Target: 5'- cGCCagGUCGUCcuCGGGGggCcUGGGCa -3' miRNA: 3'- -CGGg-UAGUAGu-GCCCCaaGuAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 68065 | 0.68 | 0.984549 |
Target: 5'- cGCUCAggGUCAgGGGGcUCAUGaACGg -3' miRNA: 3'- -CGGGUagUAGUgCCCCaAGUAUcUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 92048 | 0.68 | 0.978355 |
Target: 5'- gGCCCAUCAUCuucaACGGGGaggu--GACc -3' miRNA: 3'- -CGGGUAGUAG----UGCCCCaaguauCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 101548 | 0.73 | 0.849457 |
Target: 5'- cGCCCGUgGUCaaaggguaccuggGCGGGGUUCAcauGGCu -3' miRNA: 3'- -CGGGUAgUAG-------------UGCCCCAAGUau-CUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 101949 | 0.67 | 0.987858 |
Target: 5'- cGCCCAgCAgCACGGGGUgguUGGGu- -3' miRNA: 3'- -CGGGUaGUaGUGCCCCAaguAUCUgc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 106886 | 0.74 | 0.795325 |
Target: 5'- gGUCUAUCAUCuccaugccgcccuCGGGGUcgUCGUAGAUGg -3' miRNA: 3'- -CGGGUAGUAGu------------GCCCCA--AGUAUCUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 108398 | 1.12 | 0.006311 |
Target: 5'- aGCCCAUCAUCACGGGGUUCAUAGACGa -3' miRNA: 3'- -CGGGUAGUAGUGCCCCAAGUAUCUGC- -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 110687 | 0.7 | 0.953179 |
Target: 5'- cGUCCGcCGUCACGGGGgUCA-GGAUc -3' miRNA: 3'- -CGGGUaGUAGUGCCCCaAGUaUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 113940 | 0.7 | 0.93517 |
Target: 5'- cGCCCGUCGcCAUGGGcGaUgGUGGGCa -3' miRNA: 3'- -CGGGUAGUaGUGCCC-CaAgUAUCUGc -5' |
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3962 | 5' | -51.6 | NC_001650.1 | + | 121092 | 0.75 | 0.761581 |
Target: 5'- cGCCCGUCc---UGGGGUUCcgGGACGc -3' miRNA: 3'- -CGGGUAGuaguGCCCCAAGuaUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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