miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 3' -63.3 NC_001650.1 + 6452 0.71 0.360605
Target:  5'- gCCGCGGUGGGaaagagaGGGGC-GuGUGCCCGGa -3'
miRNA:   3'- -GGCGCCGCUC-------CCUCGaC-CACGGGCUc -5'
3978 3' -63.3 NC_001650.1 + 9180 0.67 0.576252
Target:  5'- cCCGgGGUGGuGGGGGCUaugggGGUGUgUGGGu -3'
miRNA:   3'- -GGCgCCGCU-CCCUCGA-----CCACGgGCUC- -5'
3978 3' -63.3 NC_001650.1 + 15178 0.68 0.529519
Target:  5'- gCGCGGCGcGGGGuGuCUGGggGUCgCGGGg -3'
miRNA:   3'- gGCGCCGC-UCCCuC-GACCa-CGG-GCUC- -5'
3978 3' -63.3 NC_001650.1 + 19563 0.7 0.415997
Target:  5'- gCCGCGGUcccaccGGGAGCccgGGUgccgcgcgGCCCGGGg -3'
miRNA:   3'- -GGCGCCGcu----CCCUCGa--CCA--------CGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 20679 0.67 0.595223
Target:  5'- aCGgGGgGgacGGGGGGuCUGGUGCCgGGc -3'
miRNA:   3'- gGCgCCgC---UCCCUC-GACCACGGgCUc -5'
3978 3' -63.3 NC_001650.1 + 23337 0.69 0.484249
Target:  5'- gUGCGGCGuGGGGcccCUGGaccUGCCCGuGg -3'
miRNA:   3'- gGCGCCGCuCCCUc--GACC---ACGGGCuC- -5'
3978 3' -63.3 NC_001650.1 + 23748 0.75 0.213634
Target:  5'- cUCGCGGCGcgcGGGGGGC-GGagacccGCCCGAGg -3'
miRNA:   3'- -GGCGCCGC---UCCCUCGaCCa-----CGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 26923 0.67 0.566815
Target:  5'- gCGagGGCGGGGGcgGGgaGGUGCCCc-- -3'
miRNA:   3'- gGCg-CCGCUCCC--UCgaCCACGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 26955 0.66 0.658233
Target:  5'- gUGCGcGUGGGGGAGUgcgacgccuuuaaGGUGCCCc-- -3'
miRNA:   3'- gGCGC-CGCUCCCUCGa------------CCACGGGcuc -5'
3978 3' -63.3 NC_001650.1 + 28358 0.69 0.484249
Target:  5'- cCCGCGGUGGGGGu-CUc--GCCCGGGg -3'
miRNA:   3'- -GGCGCCGCUCCCucGAccaCGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 28442 0.66 0.633401
Target:  5'- -gGCGGCGGguGGGGGC-GGccgugcugugccUGCCCGGc -3'
miRNA:   3'- ggCGCCGCU--CCCUCGaCC------------ACGGGCUc -5'
3978 3' -63.3 NC_001650.1 + 28631 0.78 0.136435
Target:  5'- aCGCGGCcuccAGGGGGCUGGUGCaggggcugguggCCGAGc -3'
miRNA:   3'- gGCGCCGc---UCCCUCGACCACG------------GGCUC- -5'
3978 3' -63.3 NC_001650.1 + 28673 0.66 0.642959
Target:  5'- gCGCGGCcAGGGAgaccguGCUGGUuuuCCUGAa -3'
miRNA:   3'- gGCGCCGcUCCCU------CGACCAc--GGGCUc -5'
3978 3' -63.3 NC_001650.1 + 37486 0.68 0.520331
Target:  5'- aCGUaGGCGAccGGGGGCUGac-CCCGAGg -3'
miRNA:   3'- gGCG-CCGCU--CCCUCGACcacGGGCUC- -5'
3978 3' -63.3 NC_001650.1 + 38316 0.71 0.38415
Target:  5'- aCgGCGGUGuGGGGGGCUGGgcuguacGCCCucguGAGa -3'
miRNA:   3'- -GgCGCCGC-UCCCUCGACCa------CGGG----CUC- -5'
3978 3' -63.3 NC_001650.1 + 42275 0.69 0.466661
Target:  5'- aCGCGGcCGAGGGGGUUuGccccccUGCCgCGAGg -3'
miRNA:   3'- gGCGCC-GCUCCCUCGAcC------ACGG-GCUC- -5'
3978 3' -63.3 NC_001650.1 + 43502 0.66 0.671561
Target:  5'- aUG-GGUGAGGGAgGCUGGcGCCaguGAGc -3'
miRNA:   3'- gGCgCCGCUCCCU-CGACCaCGGg--CUC- -5'
3978 3' -63.3 NC_001650.1 + 47833 0.69 0.484249
Target:  5'- --uUGGCaGGGGGGgaGGUGCCCaGAGu -3'
miRNA:   3'- ggcGCCGcUCCCUCgaCCACGGG-CUC- -5'
3978 3' -63.3 NC_001650.1 + 48590 0.68 0.555545
Target:  5'- aCCGCGGUGGGGacggcgcGGGCgccaggcuagcugUGGUGUgcgCCGAGu -3'
miRNA:   3'- -GGCGCCGCUCC-------CUCG-------------ACCACG---GGCUC- -5'
3978 3' -63.3 NC_001650.1 + 50006 0.67 0.566815
Target:  5'- cCCGUGGagcaaGAGGaaGAGgaGGagGCCCGGGc -3'
miRNA:   3'- -GGCGCCg----CUCC--CUCgaCCa-CGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.