Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3978 | 3' | -63.3 | NC_001650.1 | + | 163329 | 0.69 | 0.505763 |
Target: 5'- cCCgGCGGCGGGGGAcgugacuacuauggcGgUGGUGgaUCCGGGu -3' miRNA: 3'- -GG-CGCCGCUCCCU---------------CgACCAC--GGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 132855 | 0.71 | 0.38415 |
Target: 5'- gCCGCGGCGAcuGGGGGaaagGGgaagGCgCGAGc -3' miRNA: 3'- -GGCGCCGCU--CCCUCga--CCa---CGgGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 132158 | 0.71 | 0.391959 |
Target: 5'- aCCGaggcCGGCGGGgcGGAGaaGGUGCCCGuGa -3' miRNA: 3'- -GGC----GCCGCUC--CCUCgaCCACGGGCuC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 56277 | 0.69 | 0.449409 |
Target: 5'- gCGaaGGaCGGGGGGGgUGGUGCCUGGc -3' miRNA: 3'- gGCg-CC-GCUCCCUCgACCACGGGCUc -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 52558 | 0.69 | 0.471904 |
Target: 5'- -gGCGGCGGcGGGGGCguucgagucggggGGUcgucggcuucGCCCGGGa -3' miRNA: 3'- ggCGCCGCU-CCCUCGa------------CCA----------CGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 128169 | 0.69 | 0.475415 |
Target: 5'- gCCGCGcUGAGGGAgGC-GGUGgCCgCGAGg -3' miRNA: 3'- -GGCGCcGCUCCCU-CGaCCAC-GG-GCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 90549 | 0.69 | 0.475415 |
Target: 5'- cCCGgGGU-AGcGGGGCUGcGUGCCCucGAGg -3' miRNA: 3'- -GGCgCCGcUC-CCUCGAC-CACGGG--CUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 23337 | 0.69 | 0.484249 |
Target: 5'- gUGCGGCGuGGGGcccCUGGaccUGCCCGuGg -3' miRNA: 3'- gGCGCCGCuCCCUc--GACC---ACGGGCuC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 28358 | 0.69 | 0.484249 |
Target: 5'- cCCGCGGUGGGGGu-CUc--GCCCGGGg -3' miRNA: 3'- -GGCGCCGCUCCCucGAccaCGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 38316 | 0.71 | 0.38415 |
Target: 5'- aCgGCGGUGuGGGGGGCUGGgcuguacGCCCucguGAGa -3' miRNA: 3'- -GgCGCCGC-UCCCUCGACCa------CGGG----CUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 155743 | 0.71 | 0.376444 |
Target: 5'- gCGCGGCcAGGG-GCUcGGUGCagCCGGGc -3' miRNA: 3'- gGCGCCGcUCCCuCGA-CCACG--GGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 156675 | 0.71 | 0.368844 |
Target: 5'- aCCGCGGCGGugucuGGAGCUGG-GCCa--- -3' miRNA: 3'- -GGCGCCGCUc----CCUCGACCaCGGgcuc -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 133219 | 0.83 | 0.063443 |
Target: 5'- -aGCGGCGuGGGGGCUGGgagcgggccGCCCGAGa -3' miRNA: 3'- ggCGCCGCuCCCUCGACCa--------CGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 23748 | 0.75 | 0.213634 |
Target: 5'- cUCGCGGCGcgcGGGGGGC-GGagacccGCCCGAGg -3' miRNA: 3'- -GGCGCCGC---UCCCUCGaCCa-----CGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 80756 | 0.75 | 0.218593 |
Target: 5'- gCGCGGCccugGAGaaGGAGCUGGUGCCgGuGa -3' miRNA: 3'- gGCGCCG----CUC--CCUCGACCACGGgCuC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 127051 | 0.73 | 0.279835 |
Target: 5'- gUCGCgauGGaCGAGGGGGCgccGG-GCCCGGGg -3' miRNA: 3'- -GGCG---CC-GCUCCCUCGa--CCaCGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 89751 | 0.73 | 0.279835 |
Target: 5'- cCCGCcuuGCGuGGG-GCUGGUGUCUGGGu -3' miRNA: 3'- -GGCGc--CGCuCCCuCGACCACGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 88314 | 0.73 | 0.29875 |
Target: 5'- gCGCGGCG-GGGAGgUGuucGUGUUCGAGg -3' miRNA: 3'- gGCGCCGCuCCCUCgAC---CACGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 142394 | 0.72 | 0.305271 |
Target: 5'- cCCGgGGCGGuGGGAGaggggGGUcucuacggGCCCGAGg -3' miRNA: 3'- -GGCgCCGCU-CCCUCga---CCA--------CGGGCUC- -5' |
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3978 | 3' | -63.3 | NC_001650.1 | + | 121076 | 0.72 | 0.34668 |
Target: 5'- gCCGCGGCGcGGGGGGCgcccguccuggGGU-UCCGGGa -3' miRNA: 3'- -GGCGCCGC-UCCCUCGa----------CCAcGGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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