miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
400 5' -61.3 AC_000011.1 + 24209 0.66 0.321879
Target:  5'- -uGAgCACCGC-CaGCCGCgCGuuGUCGc -3'
miRNA:   3'- uuCUgGUGGUGaG-CGGCG-GCggCAGC- -5'
400 5' -61.3 AC_000011.1 + 8318 0.66 0.321879
Target:  5'- cAAGuCaACCGCgCGCCGCCGCUGcCc -3'
miRNA:   3'- -UUCuGgUGGUGaGCGGCGGCGGCaGc -5'
400 5' -61.3 AC_000011.1 + 17319 0.66 0.299064
Target:  5'- --aACCGCUugcugaugGCgCGCCGCCGCCGg-- -3'
miRNA:   3'- uucUGGUGG--------UGaGCGGCGGCGGCagc -5'
400 5' -61.3 AC_000011.1 + 12330 0.66 0.299064
Target:  5'- cAGGCCGgC-CUCGUCGCCGCgGa-- -3'
miRNA:   3'- uUCUGGUgGuGAGCGGCGGCGgCagc -5'
400 5' -61.3 AC_000011.1 + 20546 0.66 0.299064
Target:  5'- uGGGCCACguUguaGCCcUCGCCGUCGa -3'
miRNA:   3'- uUCUGGUGguGag-CGGcGGCGGCAGC- -5'
400 5' -61.3 AC_000011.1 + 23159 0.66 0.299064
Target:  5'- ---uCCGCCGC-CGCUGCCGCCc--- -3'
miRNA:   3'- uucuGGUGGUGaGCGGCGGCGGcagc -5'
400 5' -61.3 AC_000011.1 + 24398 0.66 0.291742
Target:  5'- uAGGACCcaGCCACcggGCCaGCUGCuCGUCGc -3'
miRNA:   3'- -UUCUGG--UGGUGag-CGG-CGGCG-GCAGC- -5'
400 5' -61.3 AC_000011.1 + 21331 0.66 0.287417
Target:  5'- gAAGGCCAgCCAgugcucgcccccgguCUCGCgGCCGgCCGUg- -3'
miRNA:   3'- -UUCUGGU-GGU---------------GAGCGgCGGC-GGCAgc -5'
400 5' -61.3 AC_000011.1 + 10310 0.66 0.284561
Target:  5'- ---uCCACCAC-CGCCGCCGgCaUCa -3'
miRNA:   3'- uucuGGUGGUGaGCGGCGGCgGcAGc -5'
400 5' -61.3 AC_000011.1 + 34958 0.67 0.277521
Target:  5'- gGAGAUggCACCuCUCGCCcCCGCUGUg- -3'
miRNA:   3'- -UUCUG--GUGGuGAGCGGcGGCGGCAgc -5'
400 5' -61.3 AC_000011.1 + 9962 0.67 0.263858
Target:  5'- cAAG-CCAUC-CUCGCCGagcgCGUCGUCGc -3'
miRNA:   3'- -UUCuGGUGGuGAGCGGCg---GCGGCAGC- -5'
400 5' -61.3 AC_000011.1 + 24940 0.67 0.257234
Target:  5'- --cGCCACCuGCUCG-CGCUGCCcUCGg -3'
miRNA:   3'- uucUGGUGG-UGAGCgGCGGCGGcAGC- -5'
400 5' -61.3 AC_000011.1 + 27141 0.68 0.232091
Target:  5'- uGGACCACUGC-CGCCGCuucCGCUGcuUCGc -3'
miRNA:   3'- uUCUGGUGGUGaGCGGCG---GCGGC--AGC- -5'
400 5' -61.3 AC_000011.1 + 9755 0.69 0.198287
Target:  5'- aAAGACCugguGCUcCUCGCCaccauCCGCCGUCu -3'
miRNA:   3'- -UUCUGG----UGGuGAGCGGc----GGCGGCAGc -5'
400 5' -61.3 AC_000011.1 + 10919 0.69 0.193089
Target:  5'- -cGACCGCCGCg-GCCGCCGUgagCGg -3'
miRNA:   3'- uuCUGGUGGUGagCGGCGGCGgcaGC- -5'
400 5' -61.3 AC_000011.1 + 15707 0.69 0.178205
Target:  5'- -cGGCCACCAcCUgGUCGaucaCGUCGUCGa -3'
miRNA:   3'- uuCUGGUGGU-GAgCGGCg---GCGGCAGC- -5'
400 5' -61.3 AC_000011.1 + 32346 0.69 0.178205
Target:  5'- -cGGCCACCAag-GCCGCCGCCc--- -3'
miRNA:   3'- uuCUGGUGGUgagCGGCGGCGGcagc -5'
400 5' -61.3 AC_000011.1 + 10620 0.7 0.155657
Target:  5'- -cGACCGCgaugGCUCGCUGCCGuaGUCu -3'
miRNA:   3'- uuCUGGUGg---UGAGCGGCGGCggCAGc -5'
400 5' -61.3 AC_000011.1 + 26131 0.71 0.143399
Target:  5'- cAGuCCACCuGCU-GCCGCCGCUGUgGa -3'
miRNA:   3'- uUCuGGUGG-UGAgCGGCGGCGGCAgC- -5'
400 5' -61.3 AC_000011.1 + 11878 0.71 0.132029
Target:  5'- cGGACCugCACUgGCagcccaGCCGCCGg-- -3'
miRNA:   3'- uUCUGGugGUGAgCGg-----CGGCGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.