Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
402 | 3' | -54.1 | AC_000011.1 | + | 17022 | 0.77 | 0.18124 |
Target: 5'- aCCgCCgcugCAACCACCccuGCCGCccuGGUGCGGa -3' miRNA: 3'- -GG-GGaa--GUUGGUGG---UGGCG---UUACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17310 | 0.7 | 0.453701 |
Target: 5'- uCCCCaUC-AUCGCCGCgGCGAU-CGGg -3' miRNA: 3'- -GGGGaAGuUGGUGGUGgCGUUAcGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17326 | 0.67 | 0.632424 |
Target: 5'- uCCCCc-CAACCgcuugcugauggcgcGCCGCCGCcg-GUGGu -3' miRNA: 3'- -GGGGaaGUUGG---------------UGGUGGCGuuaCGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17373 | 0.7 | 0.474244 |
Target: 5'- gCCCC---GAUCGCCGCgGCGAUGaUGGg -3' miRNA: 3'- -GGGGaagUUGGUGGUGgCGUUAC-GCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17406 | 0.66 | 0.67304 |
Target: 5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3' miRNA: 3'- ggGGAaguUGGUGGUGg---CGUUAC-GCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17840 | 0.68 | 0.571634 |
Target: 5'- uCCCCUggacaagCGgggcgagaagcgACC-CCGCCcCGAUGCGGa -3' miRNA: 3'- -GGGGAa------GU------------UGGuGGUGGcGUUACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 18449 | 0.67 | 0.626771 |
Target: 5'- gCCCacgCAcgaugugACCACCgACCGCAGccaGCGGc -3' miRNA: 3'- gGGGaa-GU-------UGGUGG-UGGCGUUa--CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 19836 | 1.14 | 0.000402 |
Target: 5'- aCCCCUUCAACCACCACCGCAAUGCGGg -3' miRNA: 3'- -GGGGAAGUUGGUGGUGGCGUUACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 20022 | 0.74 | 0.278896 |
Target: 5'- cUCCCUcggCAACgACCugCGCAcgGaCGGg -3' miRNA: 3'- -GGGGAa--GUUGgUGGugGCGUuaC-GCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 20160 | 0.68 | 0.560501 |
Target: 5'- gUCCUUCAACgACUACCuCucgGCGGc -3' miRNA: 3'- gGGGAAGUUGgUGGUGGcGuuaCGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 21064 | 0.67 | 0.614341 |
Target: 5'- cCCCCUUCucggccgguaacGCCACCACCuaaGCucuUGCu- -3' miRNA: 3'- -GGGGAAGu-----------UGGUGGUGG---CGuu-ACGcc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 22084 | 0.68 | 0.560501 |
Target: 5'- aCCCCguguaccgCAACUcCCGCgCGCAGaacGCGGg -3' miRNA: 3'- -GGGGaa------GUUGGuGGUG-GCGUUa--CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 23043 | 0.71 | 0.395152 |
Target: 5'- --gCUUCAGCUACCcCC-CGGUGCGGa -3' miRNA: 3'- gggGAAGUUGGUGGuGGcGUUACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 23715 | 0.7 | 0.423822 |
Target: 5'- gCCCggCAgGCCACCAUCGUcaagGAUGCGc -3' miRNA: 3'- gGGGaaGU-UGGUGGUGGCG----UUACGCc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 26128 | 0.66 | 0.706504 |
Target: 5'- uCCaCCU---GCUGCCGCCGC--UGUGGa -3' miRNA: 3'- -GG-GGAaguUGGUGGUGGCGuuACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 27297 | 0.73 | 0.325096 |
Target: 5'- cCCCCUUCGACgACgAuCCGCAcuccGUGGg -3' miRNA: 3'- -GGGGAAGUUGgUGgU-GGCGUua--CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 30915 | 0.66 | 0.695409 |
Target: 5'- aCCCCcaguACCGCgACCaGCGAgggcGCGGc -3' miRNA: 3'- -GGGGaaguUGGUGgUGG-CGUUa---CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 33808 | 0.67 | 0.639208 |
Target: 5'- gCCCCgcagcagUCGcuGCCGCCGCCGCuccgucaagcUGCu- -3' miRNA: 3'- -GGGGa------AGU--UGGUGGUGGCGuu--------ACGcc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 34740 | 0.66 | 0.661788 |
Target: 5'- gCgCCga-GACCGCCGCCGgCGAU-CGGu -3' miRNA: 3'- -GgGGaagUUGGUGGUGGC-GUUAcGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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