miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
402 3' -54.1 AC_000011.1 + 3645 0.68 0.549428
Target:  5'- gCUCUUCGucguuggacgcaGCUGCCGCCGCAGcUGCu- -3'
miRNA:   3'- gGGGAAGU------------UGGUGGUGGCGUU-ACGcc -5'
402 3' -54.1 AC_000011.1 + 4885 0.7 0.433651
Target:  5'- cUCCC-UCAACUACCACCuGCAGc-CGGu -3'
miRNA:   3'- -GGGGaAGUUGGUGGUGG-CGUUacGCC- -5'
402 3' -54.1 AC_000011.1 + 5263 0.7 0.474244
Target:  5'- aCCCCUUCAccgugacggagACCACCcugaCGCGGacgcUGCGa -3'
miRNA:   3'- -GGGGAAGU-----------UGGUGGug--GCGUU----ACGCc -5'
402 3' -54.1 AC_000011.1 + 7507 0.67 0.627902
Target:  5'- gCCCCacgUCAAggGCCGuCCGCGAUucGUGGa -3'
miRNA:   3'- -GGGGa--AGUUggUGGU-GGCGUUA--CGCC- -5'
402 3' -54.1 AC_000011.1 + 8325 0.67 0.6166
Target:  5'- aCUCCUgcaagUCAACCGCgCGCCGCcgcUGCc- -3'
miRNA:   3'- -GGGGA-----AGUUGGUG-GUGGCGuu-ACGcc -5'
402 3' -54.1 AC_000011.1 + 8405 0.66 0.695409
Target:  5'- aCCCUgcaagccaUCGACguCGCCACCaaugGCGcgGUGGa -3'
miRNA:   3'- gGGGA--------AGUUG--GUGGUGG----CGUuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 8535 0.66 0.706504
Target:  5'- gCCCCg--AGCCGCCccuGCCGCccgGCGc -3'
miRNA:   3'- -GGGGaagUUGGUGG---UGGCGuuaCGCc -5'
402 3' -54.1 AC_000011.1 + 9488 0.71 0.385877
Target:  5'- aCCCCccCGGCCACCuggagaUGCGcgGCGGc -3'
miRNA:   3'- -GGGGaaGUUGGUGGug----GCGUuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 10198 0.67 0.626771
Target:  5'- -aCCgcCAGCCGCCGCCGCAcuuccucAU-CGGc -3'
miRNA:   3'- ggGGaaGUUGGUGGUGGCGU-------UAcGCC- -5'
402 3' -54.1 AC_000011.1 + 10271 0.69 0.527496
Target:  5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3'
miRNA:   3'- ggGGAaGUUGGUGGUGGCGU--UACGcc -5'
402 3' -54.1 AC_000011.1 + 10322 0.67 0.639208
Target:  5'- uUCCCgcgcgccUCcACCACCGCCGCcg-GCa- -3'
miRNA:   3'- -GGGGa------AGuUGGUGGUGGCGuuaCGcc -5'
402 3' -54.1 AC_000011.1 + 10896 0.68 0.560501
Target:  5'- gCCCCagcagcaacUUcCAGCCACgACCGCc--GCGGc -3'
miRNA:   3'- -GGGG---------AA-GUUGGUGgUGGCGuuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 10981 0.69 0.516652
Target:  5'- gCCCCgcucaCGGCgGCCGCgGCGGUcGUGGc -3'
miRNA:   3'- -GGGGaa---GUUGgUGGUGgCGUUA-CGCC- -5'
402 3' -54.1 AC_000011.1 + 11979 0.66 0.690953
Target:  5'- aCCUCUUCuacguaggguccuGCCGCCGCCucCAAggcccgGCGGc -3'
miRNA:   3'- -GGGGAAGu------------UGGUGGUGGc-GUUa-----CGCC- -5'
402 3' -54.1 AC_000011.1 + 12021 0.72 0.34171
Target:  5'- -----aCAGCCACCuccugaucCCGCGAUGCGGg -3'
miRNA:   3'- ggggaaGUUGGUGGu-------GGCGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 12782 0.66 0.706504
Target:  5'- aCCUgaUUAACCugUACCGCGAgGCc- -3'
miRNA:   3'- -GGGgaAGUUGGugGUGGCGUUaCGcc -5'
402 3' -54.1 AC_000011.1 + 14908 0.68 0.538423
Target:  5'- gCCgCC-UCGGCCgcuGCCACUGC--UGCGGc -3'
miRNA:   3'- -GG-GGaAGUUGG---UGGUGGCGuuACGCC- -5'
402 3' -54.1 AC_000011.1 + 15882 0.68 0.59405
Target:  5'- gCCCUgcgCAGCaaggcucgCGCCGCgCGCAugGCGGg -3'
miRNA:   3'- gGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 15997 0.66 0.695409
Target:  5'- gCgCgac-GCCGCCACCGguGUGCGc -3'
miRNA:   3'- gGgGaaguUGGUGGUGGCguUACGCc -5'
402 3' -54.1 AC_000011.1 + 16974 0.7 0.463913
Target:  5'- aCCag-CAGCCGCCGCCGCAAg---- -3'
miRNA:   3'- gGGgaaGUUGGUGGUGGCGUUacgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.