miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
402 3' -54.1 AC_000011.1 + 19836 1.14 0.000402
Target:  5'- aCCCCUUCAACCACCACCGCAAUGCGGg -3'
miRNA:   3'- -GGGGAAGUUGGUGGUGGCGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 12782 0.66 0.706504
Target:  5'- aCCUgaUUAACCugUACCGCGAgGCc- -3'
miRNA:   3'- -GGGgaAGUUGGugGUGGCGUUaCGcc -5'
402 3' -54.1 AC_000011.1 + 30915 0.66 0.695409
Target:  5'- aCCCCcaguACCGCgACCaGCGAgggcGCGGc -3'
miRNA:   3'- -GGGGaaguUGGUGgUGG-CGUUa---CGCC- -5'
402 3' -54.1 AC_000011.1 + 15997 0.66 0.695409
Target:  5'- gCgCgac-GCCGCCACCGguGUGCGc -3'
miRNA:   3'- gGgGaaguUGGUGGUGGCguUACGCc -5'
402 3' -54.1 AC_000011.1 + 33808 0.67 0.639208
Target:  5'- gCCCCgcagcagUCGcuGCCGCCGCCGCuccgucaagcUGCu- -3'
miRNA:   3'- -GGGGa------AGU--UGGUGGUGGCGuu--------ACGcc -5'
402 3' -54.1 AC_000011.1 + 18449 0.67 0.626771
Target:  5'- gCCCacgCAcgaugugACCACCgACCGCAGccaGCGGc -3'
miRNA:   3'- gGGGaa-GU-------UGGUGG-UGGCGUUa--CGCC- -5'
402 3' -54.1 AC_000011.1 + 21064 0.67 0.614341
Target:  5'- cCCCCUUCucggccgguaacGCCACCACCuaaGCucuUGCu- -3'
miRNA:   3'- -GGGGAAGu-----------UGGUGGUGG---CGuu-ACGcc -5'
402 3' -54.1 AC_000011.1 + 17840 0.68 0.571634
Target:  5'- uCCCCUggacaagCGgggcgagaagcgACC-CCGCCcCGAUGCGGa -3'
miRNA:   3'- -GGGGAa------GU------------UGGuGGUGGcGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 20160 0.68 0.560501
Target:  5'- gUCCUUCAACgACUACCuCucgGCGGc -3'
miRNA:   3'- gGGGAAGUUGgUGGUGGcGuuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 10896 0.68 0.560501
Target:  5'- gCCCCagcagcaacUUcCAGCCACgACCGCc--GCGGc -3'
miRNA:   3'- -GGGG---------AA-GUUGGUGgUGGCGuuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 17022 0.77 0.18124
Target:  5'- aCCgCCgcugCAACCACCccuGCCGCccuGGUGCGGa -3'
miRNA:   3'- -GG-GGaa--GUUGGUGG---UGGCG---UUACGCC- -5'
402 3' -54.1 AC_000011.1 + 20022 0.74 0.278896
Target:  5'- cUCCCUcggCAACgACCugCGCAcgGaCGGg -3'
miRNA:   3'- -GGGGAa--GUUGgUGGugGCGUuaC-GCC- -5'
402 3' -54.1 AC_000011.1 + 12021 0.72 0.34171
Target:  5'- -----aCAGCCACCuccugaucCCGCGAUGCGGg -3'
miRNA:   3'- ggggaaGUUGGUGGu-------GGCGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 23715 0.7 0.423822
Target:  5'- gCCCggCAgGCCACCAUCGUcaagGAUGCGc -3'
miRNA:   3'- gGGGaaGU-UGGUGGUGGCG----UUACGCc -5'
402 3' -54.1 AC_000011.1 + 17310 0.7 0.453701
Target:  5'- uCCCCaUC-AUCGCCGCgGCGAU-CGGg -3'
miRNA:   3'- -GGGGaAGuUGGUGGUGgCGUUAcGCC- -5'
402 3' -54.1 AC_000011.1 + 16974 0.7 0.463913
Target:  5'- aCCag-CAGCCGCCGCCGCAAg---- -3'
miRNA:   3'- gGGgaaGUUGGUGGUGGCGUUacgcc -5'
402 3' -54.1 AC_000011.1 + 3645 0.68 0.549428
Target:  5'- gCUCUUCGucguuggacgcaGCUGCCGCCGCAGcUGCu- -3'
miRNA:   3'- gGGGAAGU------------UGGUGGUGGCGUU-ACGcc -5'
402 3' -54.1 AC_000011.1 + 26128 0.66 0.706504
Target:  5'- uCCaCCU---GCUGCCGCCGC--UGUGGa -3'
miRNA:   3'- -GG-GGAaguUGGUGGUGGCGuuACGCC- -5'
402 3' -54.1 AC_000011.1 + 9488 0.71 0.385877
Target:  5'- aCCCCccCGGCCACCuggagaUGCGcgGCGGc -3'
miRNA:   3'- -GGGGaaGUUGGUGGug----GCGUuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 23043 0.71 0.395152
Target:  5'- --gCUUCAGCUACCcCC-CGGUGCGGa -3'
miRNA:   3'- gggGAAGUUGGUGGuGGcGUUACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.