Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
402 | 3' | -54.1 | AC_000011.1 | + | 10322 | 0.67 | 0.639208 |
Target: 5'- uUCCCgcgcgccUCcACCACCGCCGCcg-GCa- -3' miRNA: 3'- -GGGGa------AGuUGGUGGUGGCGuuaCGcc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 34740 | 0.66 | 0.661788 |
Target: 5'- gCgCCga-GACCGCCGCCGgCGAU-CGGu -3' miRNA: 3'- -GgGGaagUUGGUGGUGGC-GUUAcGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17406 | 0.66 | 0.67304 |
Target: 5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3' miRNA: 3'- ggGGAaguUGGUGGUGg---CGUUAC-GCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 11979 | 0.66 | 0.690953 |
Target: 5'- aCCUCUUCuacguaggguccuGCCGCCGCCucCAAggcccgGCGGc -3' miRNA: 3'- -GGGGAAGu------------UGGUGGUGGc-GUUa-----CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 8405 | 0.66 | 0.695409 |
Target: 5'- aCCCUgcaagccaUCGACguCGCCACCaaugGCGcgGUGGa -3' miRNA: 3'- gGGGA--------AGUUG--GUGGUGG----CGUuaCGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 8535 | 0.66 | 0.706504 |
Target: 5'- gCCCCg--AGCCGCCccuGCCGCccgGCGc -3' miRNA: 3'- -GGGGaagUUGGUGG---UGGCGuuaCGCc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 8325 | 0.67 | 0.6166 |
Target: 5'- aCUCCUgcaagUCAACCGCgCGCCGCcgcUGCc- -3' miRNA: 3'- -GGGGA-----AGUUGGUG-GUGGCGuu-ACGcc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 15882 | 0.68 | 0.59405 |
Target: 5'- gCCCUgcgCAGCaaggcucgCGCCGCgCGCAugGCGGg -3' miRNA: 3'- gGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 22084 | 0.68 | 0.560501 |
Target: 5'- aCCCCguguaccgCAACUcCCGCgCGCAGaacGCGGg -3' miRNA: 3'- -GGGGaa------GUUGGuGGUG-GCGUUa--CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 27297 | 0.73 | 0.325096 |
Target: 5'- cCCCCUUCGACgACgAuCCGCAcuccGUGGg -3' miRNA: 3'- -GGGGAAGUUGgUGgU-GGCGUua--CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 9488 | 0.71 | 0.385877 |
Target: 5'- aCCCCccCGGCCACCuggagaUGCGcgGCGGc -3' miRNA: 3'- -GGGGaaGUUGGUGGug----GCGUuaCGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 23043 | 0.71 | 0.395152 |
Target: 5'- --gCUUCAGCUACCcCC-CGGUGCGGa -3' miRNA: 3'- gggGAAGUUGGUGGuGGcGUUACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 4885 | 0.7 | 0.433651 |
Target: 5'- cUCCC-UCAACUACCACCuGCAGc-CGGu -3' miRNA: 3'- -GGGGaAGUUGGUGGUGG-CGUUacGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 17373 | 0.7 | 0.474244 |
Target: 5'- gCCCC---GAUCGCCGCgGCGAUGaUGGg -3' miRNA: 3'- -GGGGaagUUGGUGGUGgCGUUAC-GCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 5263 | 0.7 | 0.474244 |
Target: 5'- aCCCCUUCAccgugacggagACCACCcugaCGCGGacgcUGCGa -3' miRNA: 3'- -GGGGAAGU-----------UGGUGGug--GCGUU----ACGCc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 10981 | 0.69 | 0.516652 |
Target: 5'- gCCCCgcucaCGGCgGCCGCgGCGGUcGUGGc -3' miRNA: 3'- -GGGGaa---GUUGgUGGUGgCGUUA-CGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 10271 | 0.69 | 0.527496 |
Target: 5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3' miRNA: 3'- ggGGAaGUUGGUGGUGGCGU--UACGcc -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 14908 | 0.68 | 0.538423 |
Target: 5'- gCCgCC-UCGGCCgcuGCCACUGC--UGCGGc -3' miRNA: 3'- -GG-GGaAGUUGG---UGGUGGCGuuACGCC- -5' |
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402 | 3' | -54.1 | AC_000011.1 | + | 26128 | 0.66 | 0.706504 |
Target: 5'- uCCaCCU---GCUGCCGCCGC--UGUGGa -3' miRNA: 3'- -GG-GGAaguUGGUGGUGGCGuuACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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