Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
404 | 3' | -56.1 | AC_000011.1 | + | 20092 | 1.12 | 0.000288 |
Target: 5'- uUCUUCCCCAUGGCGCACAACACGGCCu -3' miRNA: 3'- -AGAAGGGGUACCGCGUGUUGUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 6301 | 0.77 | 0.12073 |
Target: 5'- gUCUUCCCCgaauggaagugcGUGGCGCGCGAgUACGuGCa -3' miRNA: 3'- -AGAAGGGG------------UACCGCGUGUU-GUGC-CGg -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 20230 | 0.76 | 0.131565 |
Target: 5'- aUCUccaUCCCCu---CGCGCAACugGGCCg -3' miRNA: 3'- -AGA---AGGGGuaccGCGUGUUGugCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 16866 | 0.75 | 0.16041 |
Target: 5'- ---aCCCC--GGCGCaaguACGGCGCGGCCa -3' miRNA: 3'- agaaGGGGuaCCGCG----UGUUGUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 18136 | 0.74 | 0.189549 |
Target: 5'- ---gCCCCcgGGuCGCGCGcgggcCACGGCCa -3' miRNA: 3'- agaaGGGGuaCC-GCGUGUu----GUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 11220 | 0.72 | 0.229327 |
Target: 5'- aUCagCCCCGcGcGCGCGCAcguggcCGCGGCCa -3' miRNA: 3'- -AGaaGGGGUaC-CGCGUGUu-----GUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 16867 | 0.72 | 0.235554 |
Target: 5'- gUCUgcacCUCCAUGGUGCugGuGCugGGCUu -3' miRNA: 3'- -AGAa---GGGGUACCGCGugU-UGugCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 15808 | 0.72 | 0.248433 |
Target: 5'- ---cCCCCGccauGCGCGCGGCGCGaGCCu -3' miRNA: 3'- agaaGGGGUac--CGCGUGUUGUGC-CGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 18314 | 0.71 | 0.275931 |
Target: 5'- gCUgCCCCAgugGGCGUACAugcACAUcGCCg -3' miRNA: 3'- aGAaGGGGUa--CCGCGUGU---UGUGcCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 9920 | 0.71 | 0.283175 |
Target: 5'- gUCcagCCCCAgcgcGGCuucgggcucacGCGCAuGCACGGCCg -3' miRNA: 3'- -AGaa-GGGGUa---CCG-----------CGUGU-UGUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 8606 | 0.71 | 0.298114 |
Target: 5'- gUCUUCUCCG-GGCGCAguacCAgaaccuaccgcGCGCGGCg -3' miRNA: 3'- -AGAAGGGGUaCCGCGU----GU-----------UGUGCCGg -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 24669 | 0.7 | 0.305033 |
Target: 5'- --cUCCCCgcgcaggGUGGUGUGCAGCACGuucuGCCc -3' miRNA: 3'- agaAGGGG-------UACCGCGUGUUGUGC----CGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 24369 | 0.7 | 0.324895 |
Target: 5'- --gUCCCCAgaguuuggaagagcGGCGCAaacuCAugAUGGCCg -3' miRNA: 3'- agaAGGGGUa-------------CCGCGU----GUugUGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 7907 | 0.7 | 0.338104 |
Target: 5'- uUCUUCCCCAUcGGCuCGCAuccucGCACcgaaaGGCUc -3' miRNA: 3'- -AGAAGGGGUA-CCGcGUGU-----UGUG-----CCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 34285 | 0.69 | 0.355158 |
Target: 5'- cUCUUCgCUgCAUGGCGgGCGGgGCGGUg -3' miRNA: 3'- -AGAAG-GG-GUACCGCgUGUUgUGCCGg -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 7587 | 0.69 | 0.363909 |
Target: 5'- ---cCCCCAUcucccgacugGGCGCucgaGCAGCACGGgCu -3' miRNA: 3'- agaaGGGGUA----------CCGCG----UGUUGUGCCgG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 13603 | 0.69 | 0.372809 |
Target: 5'- --aUCCCCG-GGCGuCGCAGggggcCACGaGCCg -3' miRNA: 3'- agaAGGGGUaCCGC-GUGUU-----GUGC-CGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 21204 | 0.69 | 0.372809 |
Target: 5'- gCUUCCCgggauuCAUGGCcccGCACAAgcUGGCCu -3' miRNA: 3'- aGAAGGG------GUACCG---CGUGUUguGCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 3879 | 0.69 | 0.390121 |
Target: 5'- --cUCgCCCA-GGCGCugGgucaaggccucgaGCugGGCCa -3' miRNA: 3'- agaAG-GGGUaCCGCGugU-------------UGugCCGG- -5' |
|||||||
404 | 3' | -56.1 | AC_000011.1 | + | 15685 | 0.69 | 0.391047 |
Target: 5'- gUCgUCgaCgGUGGUGCGCGaccgcACGCGGCCc -3' miRNA: 3'- -AGaAGg-GgUACCGCGUGU-----UGUGCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home